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Report for CCDS35311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35311.1 Public Homo sapiens X SPIN2B 24 110 108 CCDS HistoryNCBI Gene:474343Re-query CCDS DB by CCDS ID:35311.1Re-query CCDS DB by GeneID:474343See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275988.5 ENSP00000275988.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000275988.5Link to Ensembl Protein Viewer:ENSP00000275988.5Re-query CCDS DB by Nucleotide ID:ENST00000275988Re-query CCDS DB by Protein ID:ENSP00000275988
Original member Current member EBI ENST00000333933.3 ENSP00000335008.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333933.3Link to Ensembl Protein Viewer:ENSP00000335008.3Re-query CCDS DB by Nucleotide ID:ENST00000333933Re-query CCDS DB by Protein ID:ENSP00000335008
Original member Current member EBI ENST00000434397.3 ENSP00000404314.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434397.3Link to Ensembl Protein Viewer:ENSP00000404314.2Re-query CCDS DB by Nucleotide ID:ENST00000434397Re-query CCDS DB by Protein ID:ENSP00000404314
Original member Current member NCBI NM_001006681.2 NP_001006682.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006681.2Link to Protein Sequence:NP_001006682.1Re-query CCDS DB by Nucleotide ID:NM_001006681Re-query CCDS DB by Protein ID:NP_001006682Link to BLAST:NP_001006682.1
Original member Current member NCBI NM_001006682.2 NP_001006683.1 Accepted alive Link to Nucleotide Sequence:NM_001006682.2Link to Protein Sequence:NP_001006683.1Re-query CCDS DB by Nucleotide ID:NM_001006682Re-query CCDS DB by Protein ID:NP_001006683Link to BLAST:NP_001006683.1
Original member Current member NCBI NM_001006683.2 NP_001006684.1 Accepted alive Link to Nucleotide Sequence:NM_001006683.2Link to Protein Sequence:NP_001006684.1Re-query CCDS DB by Nucleotide ID:NM_001006683Re-query CCDS DB by Protein ID:NP_001006684Link to BLAST:NP_001006684.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006682.1 258 Q9BPZ2 258 100% 0 0
NP_001006683.1 258 Q9BPZ2 258 100% 0 0
NP_001006684.1 258 Q9BPZ2 258 100% 0 0

Chromosomal Locations for CCDS 35311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57119853 57120629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAAGACCCCCAACGCACAGGAAGCCGAAGGGCAACAAACCAGGGCAGCTGCAGGACGGGCCACTGGGT
CTGCAAACATGACAAAGAAAAAAGTCTCCCAAAAGAAGCAGAGAGGCCGACCTTCATCCCAGCCCCGCAG
GAACATCGTGGGCTGCAGAATTTCTCATGGATGGAAGGAAGGAGATGAGCCCATCACGCAGTGGAAAGGA
ACCGTTCTGGATCAGGTGCCTATAAATCCCTCTCTTTATCTGGTGAAATATGATGGAATTGACTGTGTCT
ATGGACTGGAACTTCACAGAGATGAAAGGGTTTTGTCTCTTAAAATTCTTTCTGACAGGGTGGCATCATC
TCACATTAGTGATGCCAACCTTGCAAATACCATAATTGGCAAAGCAGTGGAACATATGTTTGAGGGAGAG
CATGGTTCTAAGGATGAATGGAGGGGGATGGTCTTAGCTCAAGCACCTATCATGAAAGCCTGGTTTTATA
TTACCTATGAGAAAGATCCTGTCTTGTACATGTACCAGCTTCTAGATGATTATAAGGAAGGTGACCTCCG
CATCATGCCAGAATCCAGTGAGTCTCCTCCAACAGAGAGGGAGCCAGGAGGAGTTGTAGATGGCCTAATA
GGTAAGCATGTGGAATATACCAAAGAAGATGGCTCCAAAAGGATCGGCATGGTCATTCACCAAGTGGAAG
CCAAACCCTCTGTGTATTTCATCAAGTTTGATGATGATTTCCATATCTATGTCTACGATTTGGTGAAAAA
GTCCTAA

Translation (258 aa):
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKEGDEPITQWKG
TVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGE
HGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLI
GKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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