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Report for CCDS61577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61577.1 Public Homo sapiens 15 GOLGA8K 24 110 108 CCDS HistoryNCBI Gene:653125Re-query CCDS DB by CCDS ID:61577.1Re-query CCDS DB by GeneID:653125See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 61577.1
The exon combination of this CCDS representation is inferred. It is supported by partial transcript alignments and by paralogous golgin A8 family alignments.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 61577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512626.3 ENSP00000426691.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000512626.3Link to Ensembl Protein Viewer:ENSP00000426691.2Re-query CCDS DB by Nucleotide ID:ENST00000512626Re-query CCDS DB by Protein ID:ENSP00000426691
Original member Current member NCBI NM_001282493.2 NP_001269422.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282493.2Link to Protein Sequence:NP_001269422.1Re-query CCDS DB by Nucleotide ID:NM_001282493Re-query CCDS DB by Protein ID:NP_001269422Link to BLAST:NP_001269422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269422.1 630 D6RF30 630 100% 0 0

Chromosomal Locations for CCDS 61577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32392782 32392957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32393042 32393197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32393293 32393390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32393473 32393570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32394145 32394233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32394665 32394740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32395963 32396031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32396287 32396543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32396920 32397007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32397203 32397310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32397417 32397503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32398560 32398669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32398765 32398849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32398938 32398985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32399248 32399286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32400140 32400220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32400402 32400461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32401356 32401475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32403147 32403194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGCCCTAGAGTTCCAGCAGGAGCGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGAAAGCCAC
TTCTGGTGGTTGCCAGCCACCTAGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAAGGTCCGTAGAAATCA
GTCAACTGAAGAACACCATCAAATCTCTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACAAGAAACAGAAAGCCAAAAGGGTGCTAGAGGTTCAAATCCAGACATTGAACATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGAAACGTTCTCTCAGATACTTTGAAGAAAAGTCCA
AGGATCTGGCTGTCCGCCTGCAACATTCATTGCAGCGTAAAGGAGAGTTAGAGAGTGTTCTCTCTAATGT
CATGGCCACACAGAAGAAGAAGGCAAACCAGTTGTCCAGCCGCAGCAAAGCACGTACGGAGTGGAAGTTA
GAGCAGTCCATGCGGGAGGAGGCACTACTGAAAGTGCAGCTGACACAGTTGAAGGAGTCTTTTCAACAAG
TCCAATTAGAAAGAGATGAGTATTCTGAACATCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGATGAG
AAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGCAAGATATGCGTCGGGTAGAGAAGCTG
GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCT
CTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGGCCCAGGTCAA
AAAGAATCAGCGCATAAGTCTCCTGAACCAGCGACAAGAAGAGAGGATTCAGGAGCAGGAAGAGAGGCTT
CGGAAGCAGGAGGAGAGGATTCAGGAGCAGCACAAGAGCCTTCAGCAGCTGGCCAAGCCACAGAGCGTCT
TCGAGGAGCCGAACAATGAGAACAAGAACGCACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAA
GCTTGGCGAGGAGCACCTGGAAGCGGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATG
GCTCTCCCTGGGGAAGGACACGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGA
GTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGAAGGAGAAGGCAGA
CCTGAGTGAGCTGGTGAAAAAAGAACTCTGCTTCATCCACCACTGGCGAGACAGACGCCATCAGAAAACC
CATCACCTTTTATCAGAACCAGGGGGCTGTGCCAAAGATGCGGCACTGGGAGGAGGACACCATCAGGCTG
GAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAGCAACTA
CAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACCCTGCTGATGAGCCCGGTCCAGGAGCCCCA
GCTCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTGATCTTCGTGAGGTGAGCCTCACCTCCTCTGCCC
AAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCACAAGGA
GCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTATTTTGTTGGGCTTGGCTGCCAAGAAGAAGGAGA
TAA

Translation (630 aa):
MAEETQHNKLAAAKKKLKEYWQKNSPRVPAGANRNRKTNGSIPEKATSGGCQPPRDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQIQTLNI
QKEELNTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSNVMATQKKKANQLSSRSKARTEWKL
EQSMREEALLKVQLTQLKESFQQVQLERDEYSEHLKGERARWQQRMRKMSQEICTLKKEKQQDMRRVEKL
ERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVKKNQRISLLNQRQEERIQEQEERL
RKQEERIQEQHKSLQQLAKPQSVFEEPNNENKNALQLEQQVKELQEKLGEEHLEAASQQNQQLTAQLSLM
ALPGEGHGEHLDSEGEEAPQPMPSVPEDLESREAMSSFMDHLKEKADLSELVKKELCFIHHWRDRRHQKT
HHLLSEPGGCAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNPADEPGPGAP
APQELGAADKHGDLREVSLTSSAQGEAREDPLLDKPTAQPIVQDHKEHPGLGSNCCVPLFCWAWLPRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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