NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40819.1 Public Mus musculus 9 Fyco1 23 108 98 CCDS HistoryNCBI Gene:17281Re-query CCDS DB by CCDS ID:40819.1Re-query CCDS DB by GeneID:17281See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 40819.1
The coding region has been updated to remove a 3-nt insertion versus the reference genome sequence, supported by the available transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084715.13 ENSMUSP00000081764.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084715.13Link to Ensembl Protein Viewer:ENSMUSP00000081764.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084715Re-query CCDS DB by Protein ID:ENSMUSP00000081764
Original member Current member EBI ENSMUST00000167595.8 ENSMUSP00000133222.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167595.8Link to Ensembl Protein Viewer:ENSMUSP00000133222.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167595Re-query CCDS DB by Protein ID:ENSMUSP00000133222
Original member Current member NCBI NM_001110253.2 NP_001103723.2 Accepted alive Link to Nucleotide Sequence:NM_001110253.2Link to Protein Sequence:NP_001103723.2Re-query CCDS DB by Nucleotide ID:NM_001110253Re-query CCDS DB by Protein ID:NP_001103723Link to BLAST:NP_001103723.2
Original member Current member NCBI NM_148925.3 NP_683727.3 Accepted alive Link to Nucleotide Sequence:NM_148925.3Link to Protein Sequence:NP_683727.3Re-query CCDS DB by Nucleotide ID:NM_148925Re-query CCDS DB by Protein ID:NP_683727Link to BLAST:NP_683727.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103723.2 1437 Q8VDC1 1437 100% 0 0
NP_683727.3 1437 Q8VDC1 1437 100% 0 0

Chromosomal Locations for CCDS 40819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123792674 123792749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123794725 123794834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123797517 123797727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123801222 123801317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123819047 123819191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123822318 123822529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123823178 123823327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123825506 123825673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123826546 123826664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123827085 123827177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123828176 123830479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123831287 123831377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123833098 123833241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123834793 123834899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123838872 123838997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123840542 123840648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123843459 123843513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4314 nt):
ATGGCTTCTAGCAGCACTGAGACTCAGCTCCAGAGGATCATCCGTGATCTACAAGATGCAGCGACAGAAC
TAAGCCATGAATTTAAGGAAGGCGGAGAGCCAATCACAGATGACAGCACCAGTTTGCACAAGTTTTCTTA
CAAACTTGAGTATCTTCTGCAATTTGATCAGAAGGAGAAGGCGAGCCTCCTGGGAAGCAAGAAAGACTAC
TGGGATTACTTTTGTGCGTGCCTAGCCAAGGTGAAAGGAGCAAATGATGGCATTCGATTTGTCAGGTCCA
TCTCTGAGCTCCGAACATCTCTGGGGAAAGGGAGAGCCTTCATTCGCTACTCTTTGGTGCACCAGAGGCT
GGCAGACACCTTGCAGCAGTGCTTCATGAACACTAAAGTGACCAGTGACTGGTATTATGCAAGAAGCCCC
TTTCTGAAGCCAAAGCTGAGCTCTGACATTGTGGGTCAACTGTATGAGCTGACTGAGGTTCAGTTTGATC
TAGCACCAAGAGGCTATGACTTGGATGCCGCCTGGCCAACATTTGCCAGGAGGACGCTAGCCACCAGCAC
GTCTGCTTACATGTGGAAACCCCCCAGCCGAAGCTCCAGCATGAGTAGTTTAGTGAGCAACTACTTGCAG
ACTCAGGAGATGGCCTCCAGTCTTGACCTGAATTGTTCTCTAAACAATGAAGCACTAGAAAGCTTCGACG
AGATGCGGCTGGAGCTGGACCAGTTGGAGGTTCGGGAGAAACAGCTACAAGAACGTGTACAGCAGCTAGA
CAGGGAGAACCAAGCACTGCGAATGTTGGTCAGCAGACAAGGGGGGCAGCTTCAGGTAGAGAAGGAGATG
GGGTACCTTGCAGTCGAGGACAGCATTGGCCTTGTGAGCCTGGTAGCAGAACTCCAGAAGCAGGGGGACG
TCAGCCAGGCCACAGTGAAGAAGCTACAGTCATGTCTGCAGGCCTTGGAGCTAAATGTAGACAAGAAAGA
GTACAGTCCCTCAGCCTTGCAGCTTGAGAACATGGCGAAGGAGCTTGACACTGTGAGAGGCTCCTTGGGT
AGGGAGAACCAGCTCCTGGCCAGCCTTTCAGAGCGCCTTGCTAGGGCAGAGAAAGGGGAAAAGACACCTC
CAGACACAGAGCTTCATCAGGAGCCAGTTCCTGCGGATCTGGTGCTCAAGTTCCAGGAGCTGAAGGGAAA
ACTTCAAGCCCTAGAAGGAGAGAACACCGAGGCCCAGGAGCTCAACAGGCAGCAGAGTATCAAGCTAGAG
CAACTGGCCAAGGAACTACAGCTGAAGGAGGAGGCCCGGGCTAGCCTAGCACACTTAGTGAAGGATGTGG
TCCCACTTCAGGAAGAGCTGTCTGGAAAGAAGCAAGAGTCAGCTCAGCTCCGACGACAGCTTCAGGAATC
CCTGGCCCACTTGAGCTCTGTGGAGGAGGAGCTGGCTGAAGCCAGGCAGCAGGAAAAGCAGCATCGAGAA
GAAAAGCAGCTACTGGAGCAGGAAGCCACGTCTCTTACATGGCAGCTGCAGCTCCTAGAGACCCAGCTAG
GACAGGTGAGTCAGCTTGTAAGTGACCTGGAGGAGCAGAAGAAGCAACTCATGCAGGAGAGAGACCATCT
CAGCCAGAGAGTGGGCACACTGGAGCAGCTAGCCGAGGTGCATGGCCCGCCACAGTCTGCGGAGATGCCG
GAAAAGAGGCAGCAGTGCCTCCGGGAAGAACAGGTAAACAATAGCACAGTGTCAGAGGCAGAGCAGGAGG
AGTTGCAGAAGGAGCTGCAGAACATGGTTGACCGCAACCAGCTCCTCGAAGGCAAACTGCAGGCCTTGCA
AACTGACTATAAGGCACTGCAGCAGCGAGAGGCAGCAATCCAGGGCTCTTTAGCCTCCCTGGAAGCTGAA
CAGGCTAGCATCCGGCACCTGGGAAACCAGATGGAAGCAAGCCTCCTGGCTGTGAAGAAAGCCAAAGAGA
CTATGAAAGCCCAGGTGGCAGAGAAGGAGGCTGCCCTGCAGAGTAAGGAGAGTGAGTGCCAGAGGCTGCA
GGAAGAGGCAGATCAGTGCCGGCTTCAGGCAGAGGCCCAGGCCCAGGAGCTCAGAGCTCTTGAGAACCAG
TGCCAGCAGCAGATTCAGCTGATTGAGGTCCTCTCTGCAGAGAAAGGCCAACAGGGACTCAGCCTGCCCC
AAGTCAACACAGACCAACTGGCCCTGTCTCAAGCACAGCTGGAAATCCACCAGGGGGAAGCCCAGCGGTT
ACAGAATGAGGTGGTGGACCTCCAGGCCAAGCTCCAGGTGGCCCTAGGTGATCGAGACAAGTTACAGAGC
CAGCTGGGTGTGGCTGAGACAGTTCTAAGGGAGCACAAGACCCTGGTGCAACAACTGAAAGAGCAGAATG
AAGCCCTCAACAGGGCCCATGTTCAGGAGCTGCTTCAGTGCTCAGAGAGAGAGGGGATACTACAGGAGGA
GAGCATCTACAAGGCCCAGAAGCAGGAACAAGAGCTACGAGCCCTGCAGGCAGAGCTGTCACAGGTGAGG
TGCAGCTCTGAGGGAGCCCACCTGGAACATGCAGAGCTGCAAGACCAGCTGCACCGAGCCAACACAGACA
CAGCTGAGCTTGGTATACAGGTCTGTGCACTGACAGCTGAGAAGGATCGAATGGAGGAGGCCCTGGCCAG
CCTAGCCCAGGAGCTCCAGGACTCCAAAGAGGCAGCACTACAGGAACGAAAGGGCTTGGAGCTCCAAGTG
ATGCAACTTCAGCAAGAGAAGGAGAAGTTGCAGGAAAAGGTGAAGGCAGCTGAGGAGGCAGCCAGTTCAT
TCTCTGGTCTGCAGGCACAGCTGGCCCAGGCTGAGCAGCTAGCCCAGAGCCTCCAAGAGACTGCACACCA
GGAACAAGATGCCCTCAAGTTCCAACTAAGTGCTGAGATTATGGACCACCAGAACCGATTAAAGACAGCC
AATGAAGAGTGTGGGCACCTCAGGGCCCAGCTAGAAGAACAAGGCCAGCAGCTGCAAATGACTAAGGAGG
CTGTGCAGGAACTGGAGATCACCAAGGCGGCCATGGAGGAGAAGCTGAATTGCACCAGTAGCCACCTTGC
AGAGTGCCAGGCCACTTTACTGCGCAAAGATGAAGAAAGCACTATGCTTCAAACCAGTCTAGAAAGAACA
CAGAAGGAACTTGAAAAGGCTACATCAAAAATTCAAGAATATTACAACAAACTCTGCCAAGAGGTGACAA
ACAGGGAAAGGAATGACCAGAAGATGCTTGCAGACCTCGATGACCTGAACAGAACCAAGAAATACCTTGA
GGAGCGGCTGATAGAGCTGCTCAGGGACAAAGATGCTCTCTGGCAAAAATCCGATGCACTGGAATTCCAG
CAGAAGCTCAGTGCTGAAGAGAAATGTCTTGGGGACATGGAAGTCAACCACTGCCATGACTGCAAGCGGG
AGTTCAGCTGGATAGTGCGACGGCACCACTGCAGGATATGTGGCCGTATCTTCTGTTACTACTGCTGTAA
TAACTATGTTGTGACTAAGCCCAGTGGCAAGAAGGAACGCTGCTGCCGAGCCTGCTTCCAGAAGTTCGGC
GAAGGCTCTGGATCCAATGATAGCAGTGGTTCAGGCACTAGCCAGGGAGAGCCCAGCCCCATGGTGTCAC
CAGCTGAAGCAAGTCCCCAGTCCATAGGAAGCCAAGGGATAAACTCAGTCTGCAGACCACCAGACGATGC
TGTGTTTGACATCATCACTGATGAAGAACTGTGCCAGATCCAAGAATCTGGCTCCTCCTTGCCTGAAACA
CCCACTGAAACTGATTCAATGGACCCGAATACGGCTGAACAGGACACCACATCAAACTCATTAACCCCTG
AAGACACTGAAGACGTGCCCATGGGGCAAGATGCTGAAATCTGCTTGCTGAAGTCAGGAGAGCTGATGAT
CAAATTACCCCTCACAGTAGAGGAGGTCGCCAGCTTCGGGGAGGGCAGCAGGGAGCTGTTTGTGAGGTCC
AGTACCTACAGCCTGATCACCATCACCGTGGCTGAGCCTGGCCTCACCATCAGCTGGGTCTTCTCTTCTG
ATCCCAAGAGCATCTCCTTCAGTGTGGTCTTCCAAGAGACAGAAGACACGCCGCTCGACCAGTGCAAGGT
CCTCATTCCCACCACCCGATGCAATTCCCACAAGGAGAACATCCGGGGCCAGCTGAAGGTCCGAATCCCT
GGCATCTACTTGCTCATCTTTGACAACACCTTTTCAAGATTTATCTCCAAAAAAGTGCTTTACCACCTGA
CTGTTGACCGGCCTGTGATCTACGATGGAAGCGATTTCCCATAG

Translation (1437 aa):
MASSSTETQLQRIIRDLQDAATELSHEFKEGGEPITDDSTSLHKFSYKLEYLLQFDQKEKASLLGSKKDY
WDYFCACLAKVKGANDGIRFVRSISELRTSLGKGRAFIRYSLVHQRLADTLQQCFMNTKVTSDWYYARSP
FLKPKLSSDIVGQLYELTEVQFDLAPRGYDLDAAWPTFARRTLATSTSAYMWKPPSRSSSMSSLVSNYLQ
TQEMASSLDLNCSLNNEALESFDEMRLELDQLEVREKQLQERVQQLDRENQALRMLVSRQGGQLQVEKEM
GYLAVEDSIGLVSLVAELQKQGDVSQATVKKLQSCLQALELNVDKKEYSPSALQLENMAKELDTVRGSLG
RENQLLASLSERLARAEKGEKTPPDTELHQEPVPADLVLKFQELKGKLQALEGENTEAQELNRQQSIKLE
QLAKELQLKEEARASLAHLVKDVVPLQEELSGKKQESAQLRRQLQESLAHLSSVEEELAEARQQEKQHRE
EKQLLEQEATSLTWQLQLLETQLGQVSQLVSDLEEQKKQLMQERDHLSQRVGTLEQLAEVHGPPQSAEMP
EKRQQCLREEQVNNSTVSEAEQEELQKELQNMVDRNQLLEGKLQALQTDYKALQQREAAIQGSLASLEAE
QASIRHLGNQMEASLLAVKKAKETMKAQVAEKEAALQSKESECQRLQEEADQCRLQAEAQAQELRALENQ
CQQQIQLIEVLSAEKGQQGLSLPQVNTDQLALSQAQLEIHQGEAQRLQNEVVDLQAKLQVALGDRDKLQS
QLGVAETVLREHKTLVQQLKEQNEALNRAHVQELLQCSEREGILQEESIYKAQKQEQELRALQAELSQVR
CSSEGAHLEHAELQDQLHRANTDTAELGIQVCALTAEKDRMEEALASLAQELQDSKEAALQERKGLELQV
MQLQQEKEKLQEKVKAAEEAASSFSGLQAQLAQAEQLAQSLQETAHQEQDALKFQLSAEIMDHQNRLKTA
NEECGHLRAQLEEQGQQLQMTKEAVQELEITKAAMEEKLNCTSSHLAECQATLLRKDEESTMLQTSLERT
QKELEKATSKIQEYYNKLCQEVTNRERNDQKMLADLDDLNRTKKYLEERLIELLRDKDALWQKSDALEFQ
QKLSAEEKCLGDMEVNHCHDCKREFSWIVRRHHCRICGRIFCYYCCNNYVVTKPSGKKERCCRACFQKFG
EGSGSNDSSGSGTSQGEPSPMVSPAEASPQSIGSQGINSVCRPPDDAVFDIITDEELCQIQESGSSLPET
PTETDSMDPNTAEQDTTSNSLTPEDTEDVPMGQDAEICLLKSGELMIKLPLTVEEVASFGEGSRELFVRS
STYSLITITVAEPGLTISWVFSSDPKSISFSVVFQETEDTPLDQCKVLIPTTRCNSHKENIRGQLKVRIP
GIYLLIFDNTFSRFISKKVLYHLTVDRPVIYDGSDFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH