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Report for CCDS11615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11615.1 Public Homo sapiens 17 SMG8 24 110 108 CCDS HistoryNCBI Gene:55181Re-query CCDS DB by CCDS ID:11615.1Re-query CCDS DB by GeneID:55181See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11615.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300917.10 ENSP00000300917.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300917.10Link to Ensembl Protein Viewer:ENSP00000300917.4Re-query CCDS DB by Nucleotide ID:ENST00000300917Re-query CCDS DB by Protein ID:ENSP00000300917
Original member Current member EBI ENST00000543872.6 ENSP00000438748.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543872.6Link to Ensembl Protein Viewer:ENSP00000438748.2Re-query CCDS DB by Nucleotide ID:ENST00000543872Re-query CCDS DB by Protein ID:ENSP00000438748
Original member Current member NCBI NM_018149.7 NP_060619.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018149.7Link to Protein Sequence:NP_060619.4Re-query CCDS DB by Nucleotide ID:NM_018149Re-query CCDS DB by Protein ID:NP_060619Link to BLAST:NP_060619.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060619.4 991 Q8ND04-1 991 100% 0 0

Chromosomal Locations for CCDS 11615.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59210052 59211810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59212341 59212486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59212729 59213601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59214805 59215002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCTGGTCCCGTGAGCTTGCGAGACCTTCTAATGGGAGCATCAGCCTGGATGGGCTCTGAAAGTCCCG
GAGGGTCCCCTACTGAGGGCGGAGGGAGCGCGGCTGGCGGACCGGAGCCTCCATGGCGGGAGGATGAGAT
CTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACGCCTGAATTCCGAGAAGTTCTCTCTTGTGAATACG
GTGTGCGACCGACAGGTCTTTCCTCTCTTTCGCCACCAAGATCCTGGGGATCCAGGACCTGGAATCAGAA
CTGAGGCTGGCGCCGTGGGTGAGGCCGGTGGAGCCGAGGACCCTGGGGCTGCAGCCGGGGGTTCAGTTCG
GGGAAGTGGAGCTGTCGCGGAAGGTAACCGAACTGAGGCAGGCTCCCAGGACTACAGCCTTCTGCAGGCC
TACTACAGTCAGGAAAGCAAAGTTCTGTATCTTCTCCTCACCTCCATCTGTGACAATTCACAGCTTCTCC
GGGCTTGTCGGGCTCTTCAGAGCGGGGAAGCTGGAGGTGGACTCTCTTTACCTCATGCAGAAGCACACGA
GTTCTGGAAGCATCAAGAGAAGCTGCAGTGCCTCAGTCTCCTTTACCTATTCTCTGTCTGTCATATCTTG
CTTCTGGTCCATCCCACTTGTTCCTTTGATATCACTTATGATCGAGTATTCAGAGCCCTGGATGGGCTGA
GACAGAAGGTCCTGCCGCTCCTTAAAACAGCCATTAAGGATTGTCCAGTTGGCAAAGACTGGAAGCTAAA
CTGCCGACCTTGCCCACCTAGACTCCTTTTCCTCTTTCAACTCAATGGAGCCCTCAAGGTAGAACCTCCT
CGGAACCAAGACCCAGCTCATCCAGACAAGCCCAAGAAACATTCTCCCAAAAGGAGGCTGCAGCATGCCC
TGGAGGACCAGATCTATAGAATCTTCCGGAAGAGTCGTGTCTTGACTAATCAGAGCATCAACTGCCTCTT
TACTGTGCCTGCCAACCAAGCTTTCGTGTACATAGTACCGGGAAGCCAGGAGGAGGACCCAGTAGGTATG
TTGCTGGACCAACTTAGGAGTCATTGTACTGTGAAGGACCCGGAATCTTTGCTGGTGCCTGCACCCCTTT
CTGGGCCTAGGCGATACCAGGTGATGAGGCAGCACAGCCGACAACAACTTTCCTTTCACATTGACAGCAG
CAGTTCCAGTTCTTCAGGCCAGCTAGTGGATTTCACTCTTCGGGAATTCCTATGGCAGCATGTGGAGCTA
GTTCTAAGCAAGAAAGGTTTCGATGACAGTGTGGGCAGGAACCCACAGCCTTCCCATTTTGAACTTCCTA
CTTATCAGAAGTGGATCTCAGCAGCTTCAAAACTGTATGAGGTGGCTATTGATGGGAAAGAAGAGGACTT
GGGGTCACCCACTGGAGAGCTAACATCTAAGATTTTAAGCAGTATTAAAGTCTTGGAAGGATTTTTGGAT
ATTGACACAAAATTCTCAGAAAACCGATGCCAAAAAGCTTTACCCATGGCCCACAGTGCCTACCAGTCAA
ATTTGCCTCATAATTACACAATGACTGTCCATAAGAATCAGCTTGCCCAGGCTCTTCGAGTGTACAGTCA
ACATGCTAGAGGTCCAGCATTTCACAAATACGCCATGCAGTTACATGAGGACTGCTACAAATTTTGGAGC
AATGGCCATCAGCTCTGTGAGGAGAGGAGTTTAACTGATCAACACTGTGTGCACAAATTTCACTCATTAC
CTAAATCAGGAGAAAAACCAGAGGCTGATAGAAATCCGCCTGTGCTATATCACAATAGCCGAGCTCGATC
TACTGGTGCTTGCAACTGTGGAAGGAAACAAGCACCTCGAGATGATCCCTTTGATATCAAAGCAGCCAAT
TATGACTTCTATCAGCTTCTGGAAGAAAAGTGTTGTGGAAAATTGGATCATATCAATTTCCCAGTATTTG
AACCAAGTACTCCAGATCCTGCTCCTGCTAAAAATGAATCCTCTCCTGCTCCTCCAGATTCGGATGCTGA
TAAACTTAAAGAAAAAGAACCTCAAACCCAAGGAGAGAGCACGAGCCTGAGTTTAGCTTTGAGTTTGGGC
CAATCCACAGATAGCTTAGGTACCTATCCAGCTGATCCACAAGCAGGAGGAGATAATCCAGAAGTTCATG
GTCAAGTAGAAGTGAAAACTGAGAAGAGGCCAAACTTCGTTGATCGACAGGCATCCACAGTTGAGTATCT
CCCAGGCATGCTACATTCAAATTGCCCTAAAGGTCTCCTACCCAAATTCTCCAGCTGGTCTTTGGTTAAA
CTAGGCCCTGCTAAGTCTTATAACTTTCATACAGGTTTGGACCAACAGGGCTTTATTCCAGGAACAAATT
ATCTTATGCCTTGGGACATTGTCATCAGGACTAGAGCTGAAGATGAAGGAGACTTAGACACAAACTCTTG
GCCTGCTCCAAATAAAGCTATTCCTGGAAAGAGAAGTGCGGTTGTAATGGGAAGAGGAAGACGGCGAGAT
GACATAGCTCGAGCTTTTGTGGGCTTTGAATATGAAGACTCTCGAGGTCGGAGATTCATGTGCTCTGGGC
CTGACAAAGTAATGAAAGTAATGGGAAGTGGGCCAAAGGAATCAGCTTTAAAAGCCCTAAATAGTGACAT
GCCCTTATATATTCTGTCATCCTCTCAAGGTAGAGGGCTGAAACCTCATTATGCTCAACTTATGAGGCTT
TTTGTTGTGGTTCCTGATGCTCCTTTGCAGATAATACTAATGCCTCAGGTTCAGCCAGGCCCACCACCAT
GTCCGGTATTCTACCCAGAAAAACAAGAAATCACCCTTCCACCTGATGGCCTTTGGGTTTTGAGATTTCC
TTATGCATATGTGACTGAGAGAGGACCTTGTTTCCCCCCTAAGGAAAATGTGCAGTTAATGAGCTACAAG
GTGCTCCGTGGGGTTCTTAAGGCAGTAACACAATAA

Translation (991 aa):
MAGPVSLRDLLMGASAWMGSESPGGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRLNSEKFSLVNT
VCDRQVFPLFRHQDPGDPGPGIRTEAGAVGEAGGAEDPGAAAGGSVRGSGAVAEGNRTEAGSQDYSLLQA
YYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHIL
LLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPP
RNQDPAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGM
LLDQLRSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVEL
VLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLD
IDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWS
NGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAAN
YDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLG
QSTDSLGTYPADPQAGGDNPEVHGQVEVKTEKRPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVK
LGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD
DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRL
FVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYK
VLRGVLKAVTQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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