NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32449.1 Public Homo sapiens 16 IRX6 24 110 108 CCDS HistoryNCBI Gene:79190Re-query CCDS DB by CCDS ID:32449.1Re-query CCDS DB by GeneID:79190See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290552.8 ENSP00000290552.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290552.8Link to Ensembl Protein Viewer:ENSP00000290552.8Re-query CCDS DB by Nucleotide ID:ENST00000290552Re-query CCDS DB by Protein ID:ENSP00000290552
Original member Current member NCBI NM_024335.3 NP_077311.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024335.3Link to Protein Sequence:NP_077311.2Re-query CCDS DB by Nucleotide ID:NM_024335Re-query CCDS DB by Protein ID:NP_077311Link to BLAST:NP_077311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077311.2 446 P78412 446 100% 0 0

Chromosomal Locations for CCDS 32449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55325092 55325136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55326336 55326593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55327296 55327405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55327586 55327893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55328700 55329311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55330298 55330305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGTCCTTCCCACACTTTGGACACCCGTACCGCGGCGCTTCCCAGTTTCTGGCGTCGGCAAGTTCCAGCA
CCACATGCTGCGAATCTACCCAACGCTCTGTCTCAGATGTGGCATCAGGCTCCACCCCAGCGCCCGCTCT
CTGCTGCGCACCCTACGATAGTCGACTGCTGGGCAGTGCGCGACCGGAGCTGGGCGCCGCCTTGGGCATC
TATGGAGCACCCTATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCTGCCCTATAGCCCAGAGC
CCCCCTCACTGTATGGGGCACTGAATCCACAGTATGAATTTAAGGAGGCTGCAGGGAGTTTTACATCCAG
CCTGGCACAACCAGGAGCCTATTATCCCTATGAGCGGACTCTGGGGCAGTACCAATATGAACGGTATGGC
GCAGTGGAATTGAGTGGCGCCGGTCGCCGAAAGAACGCGACCCGGGAGACCACCAGTACACTCAAGGCCT
GGCTCAACGAGCACCGCAAAAACCCCTACCCCACTAAGGGTGAGAAGATCATGCTGGCCATCATCACCAA
GATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCACGCCGGCGCCTCAAGAAAGAGAACAAAATG
ACATGGGCGCCCAAGAACAAAGGTGGGGAGGAGAGGAAGGCAGAGGGAGGAGAGGAGGACTCACTAGGCT
GCCTAACTGCTGACACCAAAGAAGTTACTGCTAGCCAGGAGGCCCGGGGGCTCCGGCTGAGTGACCTGGA
AGACCTGGAGGAAGAGGAGGAGGAGGAGGAGGAAGCTGAAGACGAGGAGGTAGTGGCCACAGCTGGGGAC
AGGCTGACGGAGTTCCGAAAGGGCGCGCAGTCACTGCCTGGGCCGTGCGCTGCAGCTCGAGAGGGCCGAT
TGGAGCGCAGGGAGTGCGGCCTGGCTGCGCCCCGCTTCTCCTTCAATGACCCTTCCGGATCGGAAGAAGC
TGACTTCCTCTCGGCGGAGACAGGCAGCCCTAGGTTGACCATGCACTACCCATGCTTGGAGAAACCGCGC
ATCTGGTCTCTGGCGCACACCGCGACAGCCAGCGCTGTTGAAGGTGCACCCCCAGCCCGGCCTAGGCCAC
GAAGTCCTGAGTGCCGTATGATTCCTGGACAGCCTCCTGCCTCTGCCCGGCGACTCTCAGTCCCCAGAGA
CTCCGCGTGCGACGAGTCTTCCTGCATACCCAAAGCCTTTGGAAACCCCAAGTTTGCCCTGCAGGGACTA
CCGCTGAACTGTGCGCCGTGCCCGCGGAGGAGCGAGCCTGTAGTGCAGTGCCAGTACCCGTCTGGAGCAG
AAGCAGGTTAG

Translation (446 aa):
MSFPHFGHPYRGASQFLASASSSTTCCESTQRSVSDVASGSTPAPALCCAPYDSRLLGSARPELGAALGI
YGAPYAAAAAAQSYPGYLPYSPEPPSLYGALNPQYEFKEAAGSFTSSLAQPGAYYPYERTLGQYQYERYG
AVELSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM
TWAPKNKGGEERKAEGGEEDSLGCLTADTKEVTASQEARGLRLSDLEDLEEEEEEEEEAEDEEVVATAGD
RLTEFRKGAQSLPGPCAAAREGRLERRECGLAAPRFSFNDPSGSEEADFLSAETGSPRLTMHYPCLEKPR
IWSLAHTATASAVEGAPPARPRPRSPECRMIPGQPPASARRLSVPRDSACDESSCIPKAFGNPKFALQGL
PLNCAPCPRRSEPVVQCQYPSGAEAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH