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Report for CCDS11199.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11199.3 Public Homo sapiens 17 FBXW10 24 110 108 CCDS HistoryNCBI Gene:10517Re-query CCDS DB by CCDS ID:11199.3Re-query CCDS DB by GeneID:10517See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11199.2
The coding region has been updated to represent an alternative splice site in the 3' coding region that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11199.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395665.9 ENSP00000379025.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395665.9Link to Ensembl Protein Viewer:ENSP00000379025.4Re-query CCDS DB by Nucleotide ID:ENST00000395665Re-query CCDS DB by Protein ID:ENSP00000379025
Original member Current member NCBI NM_001267585.2 NP_001254514.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267585.2Link to Protein Sequence:NP_001254514.1Re-query CCDS DB by Nucleotide ID:NM_001267585Re-query CCDS DB by Protein ID:NP_001254514Link to BLAST:NP_001254514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254514.1 1052 Q5XX13-1 1052 100% 0 0

Chromosomal Locations for CCDS 11199.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18744245 18744749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18747941 18748105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18749722 18749922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18750010 18750137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18750931 18751053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18756045 18756154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18758305 18758505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18764742 18764863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18766714 18766862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18768534 18768676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18769927 18770085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18772412 18772683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18775136 18775192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18778475 18779298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3159 nt):
ATGGAAAACCTGGAATCAAGGCTCAAGAATGCCCCCTATTTTCGTTGTGAGAAGGGAACCGATTCCATCC
CTCTATGCCGGAAGTGTGAGACGTGTGTCTTAGCCTGGAAGATCTTCTCTACCAAAGAGTGGTTCTGCAG
GATCAATGACATATCACAGAGGAGGTTTCTAGTTGGCATTCTGAAGCAGTTAAATAGCTTATATTTGTTA
CACTATTTCCAAAATATCCTTCAGACCACACAGGGAAAGGATTTCATCTATAACAGGTCCCGGATCAACC
TCAGCAAGAAAGAGGGGAAAGTTGTGAAGTCCTCCTTGAACCAAATGTTGGATAAAACAGTAGAACAGAA
GATGAAAGAGATCTTGTACTGGTTTGCGAACAGCACCCAGTGGACCAAGGCGAATTATACTCTCTTACTG
CTGCAGATGTGCAACCCCAAATTACTGCTCACTGCTGCCAATGTGATCAGAGTCCTGTTTCTGAGAGAGG
AGAACAATATCTCAGGGCTCAATCAAGACATCACAGATGTGTGTTTTTCCCCTGAGAAAGACCACAGCTC
CAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACTCAGCACACATCCCTTCCTTTGTCCAAAGCC
CCAGAAAATGAACACTTGCTTGGGGCAGCATCTAACCCTGAGGAACCATGGAGGAATTCACTCCGGTGTA
TATCCGAAATGAATAGGCTGTTTTCTGGAAAAGGAGACATAACCAAGCCAGGGTACGATCCCTGCAATCT
ATTGGTTGACCTGGATGACATCAGAGACCTGTCTTCTGGGTTCAGCAAATACCGAGACTTCATCCGTTAC
CTGCCCATCCACCTCTCCAAGTACATTCTAAGAATGCTGGATAGACACACCCTGAACAAGTGCGCCTCTG
TGAGCCAGCACTGGGCCGCCATGGCTCAACAGGTCAAGATGGACTTGTCAGCGCACGGCTTCATTCAGAA
CCAGATTACCTTCTTGCAGGGGTCCTACACAAGAGGAATTGATCCTAATTATGCCAATAAGGTTTCTATC
CCAGTTCCTAAAATGGTAGATGACGGGAAGAGCATGCGTGTGAAACATCCGAAGTGGAAGCTGAGAACGA
AGAATGAGTACAACCTGTGGACTGCATACCAGAACGAGGAAACGCAGCAGGTCCTGATAGAGGAGAGAAA
TGTTTTCTGTGGGACCTACAATGTTCGCATTCTCTCTGACACGTGGGATCAAAACCGAGTCATCCACTAT
TCCGGGGGAGATCTGATAGCTGTGTCATCTAATCGAAAGATCCATCTTCTGGACATCATACAAGTGAAAG
CGATACCCGTTGAATTCCGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTCCTGTGTGAGGAGGAAAACTT
TCTCCTAAGCGGGAGCTATGACCTAAGTATCAGATACTGGGATCTGAAAAGTGGGGTTTGCACACGAATC
TTCGGTGGTCACCAGGGGACTATCACTTGCATGGACTTGTGTAAGAACAGGCTCGTATCTGGAGGAAGAG
ATTGCCAGGTAAAAGTATGGGATGTAGACACAGGGAAGTGCCTGAAGACGTTTAGACACAAAGACCCCAT
CTTGGCCACCAGGATCAATGATACCTACATTGTGAGCAGCTGTGAGCGAGGGCTGGTGAAAGTGTGGCAC
ATTGCCATGGCCCAGTTGGTAAAGACTCTCAGTGGCCATGAGGGAGCCGTGAAATGCCTGTTCTTTGACC
AGTGGCATCTCCTCTCAGGAAGTACTGATGGCCTGGTCATGGCCTGGAGCATGGTGGGGAAGTACGAGCG
CTGCCTGATGGCCTTCAAGCATCCCAAGGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGC
GCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCA
ATGGCAGAGGTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAGGATGGTGGTCAACACAGAGAGCAA
TGTTCTCATGTTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAAT
AAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAATATTCAGGTTC
ACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTCCTACCAGGCAAACCTCCCAA
GTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAGCAGTGTTAATAGAGGAACTTCAAAGTCAAGGA
AAGTCAAAATCACCCCGAAGAGATGCAGATGATGTGGAGAAAGCACAAAAACAAGGACAATTGGAAACTC
CTGGAAAACTGCCCAGTCACCCAAAGAAAAAGTCTTGGAAAATCCCTATGTCACCTGACCAATTCCTCCT
GACTGTTAGCGCCCTGCAGCACGCCCATAATTCCGGGGAATTTGCCTATCCCTGTAGGCCCCAAACAGAA
ATTACTGATGTCTGGGGACCTTCAATTTCATACCCAAGGAAGGTCTTGAATTTCAAAGGAAAATCAATCC
AACGTGCAGTTGATCGGTTGAGATTGAGCAATCCTCCTATAGATGTGAAACGAACCAGTATTCCCCTTGA
AATCCAGAAACTGCAGCCCAACTTGAAGATCTCTTTGCACAGTCCTAGAGTCCAGTCCACCATACCCCAG
CCCATGATTATCCGCTCCAGGTTCTCTGGCAGCTTAAAGGGTGGAGACCAAGTGACCAGTTCAATTGAAA
GGGCTGTGTGCAGTACGGGTCCCCTGACCAGTATGCAGGTCATTAAACCAAACCGCATGCTAGCTCCACA
AGTGGGCACAGCCACCCTGTCTCTTAAGAAAGAACGGCCTCGCATCTATACAGCCCTTGATCCTTTTAGA
GTGAACACTGAGTTCGTGCTGTTGACCGTGAAGGAGGAGAAGGAGCACCAGGAAGCCAAGATGAAGGAAT
ATCAGGCCAGGGAGTCCACTGGAGTGGTTGATCCAGGAAAAGTCAGCAAAGCTGCATGGATCAGGAAGAT
CAAAGGCCTGCCTATTGATAATTTCACGAAGCAAGGGAAAACAGCGGCCCCTGAACTTGGACAAAATGTA
TTTATCTAA

Translation (1052 aa):
MENLESRLKNAPYFRCEKGTDSIPLCRKCETCVLAWKIFSTKEWFCRINDISQRRFLVGILKQLNSLYLL
HYFQNILQTTQGKDFIYNRSRINLSKKEGKVVKSSLNQMLDKTVEQKMKEILYWFANSTQWTKANYTLLL
LQMCNPKLLLTAANVIRVLFLREENNISGLNQDITDVCFSPEKDHSSKSATSQVYWTAKTQHTSLPLSKA
PENEHLLGAASNPEEPWRNSLRCISEMNRLFSGKGDITKPGYDPCNLLVDLDDIRDLSSGFSKYRDFIRY
LPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVKMDLSAHGFIQNQITFLQGSYTRGIDPNYANKVSI
PVPKMVDDGKSMRVKHPKWKLRTKNEYNLWTAYQNEETQQVLIEERNVFCGTYNVRILSDTWDQNRVIHY
SGGDLIAVSSNRKIHLLDIIQVKAIPVEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGVCTRI
FGGHQGTITCMDLCKNRLVSGGRDCQVKVWDVDTGKCLKTFRHKDPILATRINDTYIVSSCERGLVKVWH
IAMAQLVKTLSGHEGAVKCLFFDQWHLLSGSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVIS
ACADGKIRIYNFLNGNCMKVLKANGRGDPVLSFFIQGNRMVVNTESNVLMFQFEHIKWQYAVEKTKQKKN
KEKEEEKEENSLMEILSKCNIQVHSPRESVSSKQTVIQELLPGKPPKSRVLLKPAKFSSAVLIEELQSQG
KSKSPRRDADDVEKAQKQGQLETPGKLPSHPKKKSWKIPMSPDQFLLTVSALQHAHNSGEFAYPCRPQTE
ITDVWGPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRVQSTIPQ
PMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFR
VNTEFVLLTVKEEKEHQEAKMKEYQARESTGVVDPGKVSKAAWIRKIKGLPIDNFTKQGKTAAPELGQNV
FI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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