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Report for CCDS12309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12309.1 Public Homo sapiens 19 PTGER1 24 110 108 CCDS HistoryNCBI Gene:5731Re-query CCDS DB by CCDS ID:12309.1Re-query CCDS DB by GeneID:5731See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292513.4 ENSP00000292513.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292513.4Link to Ensembl Protein Viewer:ENSP00000292513.3Re-query CCDS DB by Nucleotide ID:ENST00000292513Re-query CCDS DB by Protein ID:ENSP00000292513
Original member Current member NCBI NM_000955.3 NP_000946.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000955.3Link to Protein Sequence:NP_000946.2Re-query CCDS DB by Nucleotide ID:NM_000955Re-query CCDS DB by Protein ID:NP_000946Link to BLAST:NP_000946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000946.2 402 P34995 402 100% 0 0

Chromosomal Locations for CCDS 12309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14472560 14472826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14473379 14474320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGAGCCCTTGCGGGCCCCTCAACCTGAGCCTGGCGGGCGAGGCGACCACATGCGCGGCGCCCTGGGTCC
CCAACACGTCGGCCGTGCCGCCGTCGGGCGCTTCGCCCGCGCTGCCCATCTTCTCCATGACGCTGGGCGC
CGTGTCCAACCTGCTGGCGCTGGCGCTGCTGGCGCAGGCCGCGGGCCGCCTGCGACGCCGCCGCTCGGCC
GCCACCTTCCTGCTGTTCGTGGCCAGCCTGCTGGCCACCGACCTGGCGGGCCACGTGATCCCGGGCGCGC
TGGTGCTGCGTCTGTACACTGCGGGGCGCGCTCCGGCCGGCGGGGCCTGCCACTTCCTGGGCGGCTGCAT
GGTCTTCTTCGGCCTGTGCCCGCTGCTGCTGGGCTGTGGCATGGCCGTGGAGCGCTGCGTGGGCGTCACG
CGGCCGCTGCTCCACGCCGCGCGGGTCTCGGTCGCCCGCGCGCGCCTGGCGCTGGCCGCGGTGGCCGCGG
TGGCCTTGGCCGTGGCGCTGCTGCCGCTGGCGCGCGTGGGCCGCTATGAGCTGCAGTACCCGGGCACGTG
GTGCTTCATCGGCCTGGGTCCCCCGGGCGGCTGGCGCCAGGCACTGCTTGCTGGCCTCTTCGCCAGCCTC
GGCCTGGTCGCGCTCCTCGCCGCGCTGGTGTGCAACACGCTCAGCGGCCTGGCCCTGCTACGCGCCCGCT
GGCGACGCCGCTCCCGACGGCCTCCCCCGGCCTCAGGCCCCGACAGCCGGCGTCGCTGGGGGGCGCACGG
ACCCCGCTCGGCCTCCGCCTCGTCCGCCTCGTCCATCGCTTCGGCCTCCACCTTCTTTGGCGGCTCTCGG
AGCAGCGGCTCGGCACGCAGAGCTCGCGCCCACGACGTGGAGATGGTGGGCCAGCTTGTCGGTATCATGG
TGGTGTCGTGCATCTGCTGGAGCCCAATGCTGGTGTTGGTGGCGCTGGCCGTCGGCGGCTGGAGCTCTAC
CTCCCTGCAGCGGCCACTGTTCCTGGCCGTGCGCCTTGCCTCCTGGAACCAGATCCTGGACCCTTGGGTG
TACATCCTACTGCGCCAGGCCGTGCTGCGCCAACTGCTTCGCCTCTTGCCCCCGAGGGCCGGAGCCAAGG
GCGGCCCCGCGGGGCTGGGCCTAACACCGAGCGCCTGGGAGGCCAGCTCGCTGCGCAGCTCCCGGCACAG
CGGCCTCAGCCACTTCTAA

Translation (402 aa):
MSPCGPLNLSLAGEATTCAAPWVPNTSAVPPSGASPALPIFSMTLGAVSNLLALALLAQAAGRLRRRRSA
ATFLLFVASLLATDLAGHVIPGALVLRLYTAGRAPAGGACHFLGGCMVFFGLCPLLLGCGMAVERCVGVT
RPLLHAARVSVARARLALAAVAAVALAVALLPLARVGRYELQYPGTWCFIGLGPPGGWRQALLAGLFASL
GLVALLAALVCNTLSGLALLRARWRRRSRRPPPASGPDSRRRWGAHGPRSASASSASSIASASTFFGGSR
SSGSARRARAHDVEMVGQLVGIMVVSCICWSPMLVLVALAVGGWSSTSLQRPLFLAVRLASWNQILDPWV
YILLRQAVLRQLLRLLPPRAGAKGGPAGLGLTPSAWEASSLRSSRHSGLSHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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