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Report for CCDS11093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11093.1 Public Homo sapiens 17 CTDNEP1 24 110 108 CCDS HistoryNCBI Gene:23399Re-query CCDS DB by CCDS ID:11093.1Re-query CCDS DB by GeneID:23399See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318988.10 ENSP00000321732.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318988.10Link to Ensembl Protein Viewer:ENSP00000321732.6Re-query CCDS DB by Nucleotide ID:ENST00000318988Re-query CCDS DB by Protein ID:ENSP00000321732
Original member Current member EBI ENST00000574205.5 ENSP00000458758.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574205.5Link to Ensembl Protein Viewer:ENSP00000458758.1Re-query CCDS DB by Nucleotide ID:ENST00000574205Re-query CCDS DB by Protein ID:ENSP00000458758
Original member Current member EBI ENST00000574322.6 ENSP00000460683.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000574322.6Link to Ensembl Protein Viewer:ENSP00000460683.1Re-query CCDS DB by Nucleotide ID:ENST00000574322Re-query CCDS DB by Protein ID:ENSP00000460683
Original member Current member EBI ENST00000573600.5 ENSP00000461749.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573600.5Link to Ensembl Protein Viewer:ENSP00000461749.1Re-query CCDS DB by Nucleotide ID:ENST00000573600Re-query CCDS DB by Protein ID:ENSP00000461749
Original member Current member NCBI NM_001143775.2 NP_001137247.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143775.2Link to Protein Sequence:NP_001137247.1Re-query CCDS DB by Nucleotide ID:NM_001143775Re-query CCDS DB by Protein ID:NP_001137247Link to BLAST:NP_001137247.1
Original member Current member NCBI NM_015343.5 NP_056158.2 Accepted alive Link to Nucleotide Sequence:NM_015343.5Link to Protein Sequence:NP_056158.2Re-query CCDS DB by Nucleotide ID:NM_015343Re-query CCDS DB by Protein ID:NP_056158Link to BLAST:NP_056158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137247.1 244 O95476 244 100% 0 0
NP_056158.2 244 O95476 244 100% 0 0

Chromosomal Locations for CCDS 11093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7244185 7244245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7244551 7244635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7246026 7246137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7246254 7246370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7246791 7246862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7247064 7247182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7247277 7247343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7251195 7251296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGATGCGGACGCAGTGTCTGCTGGGGCTGCGCACGTTCGTGGCCTTCGCCGCCAAGCTCTGGAGCTTCT
TCATTTACCTTCTGCGGAGGCAGATCCGCACGGTAATTCAGTACCAAACTGTTCGATATGATATCCTCCC
CTTATCTCCTGTGTCCCGGAATCGGCTAGCCCAGGTGAAGAGGAAGATCCTGGTGCTGGATCTGGATGAG
ACACTTATTCACTCCCACCATGATGGGGTCCTGAGGCCCACAGTCCGGCCTGGTACGCCTCCTGACTTCA
TCCTCAAGGTGGTAATAGACAAACATCCTGTCCGGTTTTTTGTACATAAGAGGCCCCATGTGGATTTCTT
CCTGGAAGTGGTGAGCCAGTGGTACGAGCTGGTGGTGTTTACAGCAAGCATGGAGATCTATGGCTCTGCT
GTGGCAGATAAACTGGACAATAGCAGAAGCATTCTTAAGAGGAGATATTACAGACAGCACTGCACTTTGG
AGTTGGGCAGCTACATCAAGGACCTCTCTGTGGTCCACAGTGACCTCTCCAGCATTGTGATCCTGGATAA
CTCCCCAGGGGCTTACAGGAGCCATCCAGACAATGCCATCCCCATCAAATCCTGGTTCAGTGACCCCAGC
GACACAGCCCTTCTCAACCTGCTCCCAATGCTGGATGCCCTCAGGTTCACCGCTGATGTTCGTTCCGTGC
TGAGCCGAAACCTTCACCAACATCGGCTCTGGTGA

Translation (244 aa):
MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKILVLDLDE
TLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA
VADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPS
DTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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