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Report for CCDS56405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56405.1 Public Homo sapiens 6 BTN2A1 24 110 108 CCDS HistoryNCBI Gene:11120Re-query CCDS DB by CCDS ID:56405.1Re-query CCDS DB by GeneID:11120See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541522.5 ENSP00000443909.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541522.5Link to Ensembl Protein Viewer:ENSP00000443909.1Re-query CCDS DB by Nucleotide ID:ENST00000541522Re-query CCDS DB by Protein ID:ENSP00000443909
Original member Current member NCBI NM_001197233.3 NP_001184162.1 Accepted alive Link to Nucleotide Sequence:NM_001197233.3Link to Protein Sequence:NP_001184162.1Re-query CCDS DB by Nucleotide ID:NM_001197233Re-query CCDS DB by Protein ID:NP_001184162Link to BLAST:NP_001184162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184162.1 466 Q7KYR7-5 466 100% 0 0

Chromosomal Locations for CCDS 56405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26459582 26459828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26463244 26463525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26465185 26465406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26465953 26465973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26466062 26466088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26467948 26468549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGGTGCGGTGGTTCCGGTCTCAGTTCTCCCCCGCAGTGTTTGTGTATAAAGGTGGCAGAGAGAGAA
CAGAGGAGCAGATGGAGGAGTACCGAGGAAGAACCACCTTTGTGAGCAAAGACATCAGCAGGGGCAGCGT
GGCCCTGGTCATACACAACATCACAGCCCAGGAAAACGGCACCTACCGCTGTTACTTCCAAGAAGGCAGG
TCCTACGATGAGGCCATCCTGCACCTCGTAGTGGCAGGACTAGGCTCTAAGCCCCTCATTTCAATGAGGG
GCCATGAAGACGGGGGCATCCGGCTGGAGTGCATATCTAGAGGGTGGTACCCAAAGCCCCTCACAGTGTG
GAGGGACCCCTACGGTGGGGTTGCGCCTGCCCTGAAAGAGGTCTCCATGCCTGATGCAGACGGCCTCTTC
ATGGTCACCACGGCTGTGATCATCAGAGACAAGTCTGTGAGGAACATGTCCTGCTCTATCAACAACACCC
TGCTCGGCCAGAAGAAAGAAAGTGTCATTTTTATTCCAGAATCCTTTATGCCCAGTGTGTCTCCCTGTGC
AGTGGCCCTGCCTATCATTGTGGTTATTCTGATGATACCCATTGCCGTATGCATCTATTGGATCAACAAA
CTCCAAAAGGAAAAAAAGATTCTGTCAGGGGAAAAGGAGTTTGAACGGGAAACAAGAGAAATTGCTCTAA
AGGAACTGGAGAAAGAACGTGTGCAAAAAGAGGAAGAACTTCAAGTAAAAGAGAAACTTCAAGAAGAATT
GCGATGGAGAAGAACATTCTTACATGCTGTTGATGTGGTCCTGGATCCAGACACCGCTCATCCCGATCTC
TTCCTGTCAGAGGACCGGAGAAGTGTGAGAAGGTGCCCCTTCAGGCACCTAGGGGAGAGCGTGCCTGACA
ACCCAGAGAGATTCGACAGTCAGCCTTGTGTCCTAGGCCGGGAGAGCTTCGCTTCAGGGAAACATTACTG
GGAGGTGGAGGTGGAAAACGTGATTGAGTGGACTGTGGGGGTCTGTAGAGACAGTGTTGAGAGGAAAGGG
GAGGTCCTGCTGATTCCTCAGAATGGCTTCTGGACCTTGGAGATGCATAAAGGGCAATACCGGGCCGTGT
CCTCCCCTGATAGGATTCTCCCTTTGAAGGAGTCCCTTTGCCGGGTGGGCGTCTTCCTGGACTATGAAGC
TGGAGATGTCTCCTTCTACAACATGAGGGACAGATCGCACATCTACACATGTCCCCGTTCAGCCTTTTCC
GTGCCTGTGAGGCCCTTCTTCAGGTTGGGGTGTGAGGACAGCCCCATCTTCATCTGCCCTGCACTCACAG
GAGCCAATGGGGTCACGGTGCCTGAAGAGGGCCTGACACTTCACAGAGTGGGGACCCACCAGAGCCTATA
G

Translation (466 aa):
MEVRWFRSQFSPAVFVYKGGRERTEEQMEEYRGRTTFVSKDISRGSVALVIHNITAQENGTYRCYFQEGR
SYDEAILHLVVAGLGSKPLISMRGHEDGGIRLECISRGWYPKPLTVWRDPYGGVAPALKEVSMPDADGLF
MVTTAVIIRDKSVRNMSCSINNTLLGQKKESVIFIPESFMPSVSPCAVALPIIVVILMIPIAVCIYWINK
LQKEKKILSGEKEFERETREIALKELEKERVQKEEELQVKEKLQEELRWRRTFLHAVDVVLDPDTAHPDL
FLSEDRRSVRRCPFRHLGESVPDNPERFDSQPCVLGRESFASGKHYWEVEVENVIEWTVGVCRDSVERKG
EVLLIPQNGFWTLEMHKGQYRAVSSPDRILPLKESLCRVGVFLDYEAGDVSFYNMRDRSHIYTCPRSAFS
VPVRPFFRLGCEDSPIFICPALTGANGVTVPEEGLTLHRVGTHQSL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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