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Report for CCDS3913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3913.1 Public Homo sapiens 5 UGT3A1 24 110 108 CCDS HistoryNCBI Gene:133688Re-query CCDS DB by CCDS ID:3913.1Re-query CCDS DB by GeneID:133688See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274278.8 ENSP00000274278.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274278.8Link to Ensembl Protein Viewer:ENSP00000274278.3Re-query CCDS DB by Nucleotide ID:ENST00000274278Re-query CCDS DB by Protein ID:ENSP00000274278
Original member Current member NCBI NM_152404.4 NP_689617.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152404.4Link to Protein Sequence:NP_689617.3Re-query CCDS DB by Nucleotide ID:NM_152404Re-query CCDS DB by Protein ID:NP_689617Link to BLAST:NP_689617.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689617.3 523 Q6NUS8-1 523 100% 0 0

Chromosomal Locations for CCDS 3913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35954202 35954478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35955645 35955864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35957188 35957419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35965386 35965917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35968019 35968133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35988450 35988551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35991147 35991240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGTTGGGCAGCGGGTGCTGCTTCTAGTGGCCTTCCTTCTTTCTGGGGTCCTGCTCTCAGAGGCTGCCA
AAATCCTGACAATATCTACACTGGGTGGAAGCCATTACCTACTGTTGGACCGGGTGTCTCAGATTCTTCA
AGAGCATGGTCATAATGTGACTATGCTTCATCAGAGTGGAAAGTTTTTGATCCCAGATATTAAAGAGGAG
GAAAAATCATACCAAGTTATCAGGTGGTTTTCACCTGAAGATCATCAAAAAAGAATTAAGAAGCATTTTG
ATAGCTACATAGAAACAGCATTGGATGGCAGAAAAGAATCTGAAGCCCTTGTAAAGCTAATGGAAATATT
TGGGACTCAATGTAGTTATTTGCTAAGCAGAAAGGATATAATGGATTCCTTAAAGAATGAGAACTATGAT
CTGGTATTTGTTGAAGCATTTGATTTCTGTTCTTTCCTGATTGCTGAGAAGCTTGTGAAACCATTTGTGG
CCATTCTTCCCACCACATTCGGCTCTTTGGATTTTGGGCTACCAAGCCCCTTGTCTTATGTTCCAGTATT
CCCTTCCTTGCTGACTGATCACATGGACTTCTGGGGCCGAGTGAAGAATTTTCTGATGTTCTTTAGTTTC
TCCAGGAGCCAATGGGACATGCAGTCTACATTTGACAACACCATCAAGGAGCATTTCCCAGAAGGCTCTA
GGCCAGTTTTGTCTCATCTTCTACTGAAAGCAGAGTTGTGGTTTGTTAACTCTGATTTTGCCTTTGATTT
TGCCCGGCCCCTGCTTCCCAACACTGTTTATATTGGAGGCTTGATGGAAAAACCTATTAAACCAGTACCA
CAAGACTTGGACAACTTCATTGCCAACTTTGGGGATGCAGGGTTTGTCCTTGTGGCCTTTGGCTCCATGT
TGAACACCCATCAGTCCCAGGAAGTCCTCAAGAAGATGCACAATGCCTTTGCCCACCTCCCTCAAGGAGT
GATATGGACATGTCAGAGTTCTCATTGGCCCAGAGATGTTCATTTGGCCACAAATGTGAAAATTGTGGAC
TGGCTTCCTCAGAGTGACCTCCTGGCTCACCCCAGCATCCGTCTTTTTGTCACTCATGGTGGGCAGAACA
GCGTAATGGAGGCCATCCGTCATGGTGTGCCCATGGTGGGATTACCAGTCAATGGAGACCAGCATGGAAA
CATGGTCCGAGTAGTAGCCAAAAATTATGGTGTCTCTATCCGGTTGAATCAGGTCACAGCCGACACACTG
ACACTTACAATGAAACAAGTCATAGAAGACAAGAGGTACAAGTCGGCAGTGGTGGCAGCCAGTGTCATCC
TGCACTCTCAGCCCCTGAGCCCCGCACAGCGGCTGGTGGGCTGGATCGACCACATCCTCCAGACTGGGGG
AGCGACGCACCTCAAGCCCTATGCCTTCCAGCAGCCTTGGCATGAGCAGTACCTCATTGATGTCTTTGTG
TTTCTGCTGGGGCTCACTCTGGGCACTATGTGGCTTTGTGGGAAGCTGCTGGGTGTGGTGGCCAGGTGGC
TGCGTGGGGCCAGGAAGGTGAAGAAGACATGA

Translation (523 aa):
MVGQRVLLLVAFLLSGVLLSEAAKILTISTLGGSHYLLLDRVSQILQEHGHNVTMLHQSGKFLIPDIKEE
EKSYQVIRWFSPEDHQKRIKKHFDSYIETALDGRKESEALVKLMEIFGTQCSYLLSRKDIMDSLKNENYD
LVFVEAFDFCSFLIAEKLVKPFVAILPTTFGSLDFGLPSPLSYVPVFPSLLTDHMDFWGRVKNFLMFFSF
SRSQWDMQSTFDNTIKEHFPEGSRPVLSHLLLKAELWFVNSDFAFDFARPLLPNTVYIGGLMEKPIKPVP
QDLDNFIANFGDAGFVLVAFGSMLNTHQSQEVLKKMHNAFAHLPQGVIWTCQSSHWPRDVHLATNVKIVD
WLPQSDLLAHPSIRLFVTHGGQNSVMEAIRHGVPMVGLPVNGDQHGNMVRVVAKNYGVSIRLNQVTADTL
TLTMKQVIEDKRYKSAVVAASVILHSQPLSPAQRLVGWIDHILQTGGATHLKPYAFQQPWHEQYLIDVFV
FLLGLTLGTMWLCGKLLGVVARWLRGARKVKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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