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Report for CCDS49279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49279.1 Public Mus musculus 13 Spock1 23 108 98 CCDS HistoryNCBI Gene:20745Re-query CCDS DB by CCDS ID:49279.1Re-query CCDS DB by GeneID:20745See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49279.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172326.2 ENSMUSP00000128840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172326.2Link to Ensembl Protein Viewer:ENSMUSP00000128840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172326Re-query CCDS DB by Protein ID:ENSMUSP00000128840
Original member Current member EBI ENSMUST00000186271.6 ENSMUSP00000140755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186271.6Link to Ensembl Protein Viewer:ENSMUSP00000140755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186271Re-query CCDS DB by Protein ID:ENSMUSP00000140755
Original member Current member NCBI NM_001166463.1 NP_001159935.1 Accepted alive Link to Nucleotide Sequence:NM_001166463.1Link to Protein Sequence:NP_001159935.1Re-query CCDS DB by Nucleotide ID:NM_001166463Re-query CCDS DB by Protein ID:NP_001159935Link to BLAST:NP_001159935.1

Chromosomal Locations for CCDS 49279.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57429295 57429485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57430289 57430426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57436110 57436172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57440321 57440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57444307 57444423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57512692 57512806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57556680 57556806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57587619 57587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57696110 57696155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57907402 57907587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGCCAGCGATCGCGGTGCTCGCGGCGGCCGCCGCGGCGTGGTGCTTCCTCCAAGTGGACAGCCGGCACC
TGGACGCGCTGGCCGGTGGCGCGGCCCTCAACAACGCCAATTTCCTAGACAATGACCAGTGGCTGAGCAC
TGTCTCCCAGTATGACCGTGACAAGTACTGGAACCGCTTCCGAGATGATGACTATTTCAGAAACTGGAAT
CCCAACAAGCCCTTCGACCAAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTGAAATGCAGCCCGC
ACAAAGTATGTGTGACCCAGGACTACCAGACGGCTCTGTGTGTCAGCCGCAAGCACCTGTTGCCCAGGCA
GAAGAAGGGCAATGTGGCTCACAAACACTGGCTTGGACCTTCCAATCTGGTTAAGTGCAAGCCTTGCCCC
GTGGCGCAGTCAGCGATGGTCTGCGGCTCTGACGGCCACACGTACACGTCCAAGTGCAAGTTGGAATTCC
ACGCTTGTTCTACAGGCAAAAGCCTCAACTCCCTCTGTGATGGGCCCTGTCCGTGTCTGCCTGAGCCTGA
GCCACTGAAGCCCAAAGCAGAGAAGAGTGCCTGCACGGACAAGGAGCTGCGGAACCTCGCCTCCCGGCTG
AAGGACTGGTTCGGGGCTCTTCATGAGGACGCCAATAGAGTCATCAAGCCTACCAGCTCTGATCCAGCCC
AAGGCAGGTTTGACACCAGCATCTTACCCATTTGCAAGGACTCCTTGGGTTGGATGTTCAACAAGTTGGA
CATGAACTATGACCTGTTGCTGGACCACTCAGAGATCAATGCCATCTACCTAGACAAATATGAGCCCTGC
ATCAAGCCTCTCTTCAACTCGTGCGACTCCTTCAAGGACGGCAAACTCTCCAACAATGAGTGGTGTTACT
GCTTCCAGAAGCCAGCGGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTAAGCAAGGGGAA
AAGCCTACTGGGGGCCTTCATCCCTCGATGTAACGAGGAGGGCTACTACAAAGCCACACAGTGCCACGGC
AGCACGGGGCAGTGCTGGTGTGTGGATAAATATGGGAACGAGCTGGCCGGCTCCAGGAAACAGGGCACTG
TAAGCTGCGAAGAGGAGCAGGAAACCTCCGGGGACTTCGGCAGTGGAGGCTCCGTGGTCCTGCTGGATGA
CCTAGAGGATGAGCGGGAGCTGGGACCAAAGGACAAAGAAGGGAAGCTGAGGGTGCGCACCCGGGCCGTG
CGGGAAGATGATGAGGATGAAGATGACGACAAAGAAGATGAGGTCGGGTACATATGGTAG

Translation (439 aa):
MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRFRDDDYFRNWN
PNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCP
VAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL
KDWFGALHEDANRVIKPTSSDPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPC
IKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHG
STGQCWCVDKYGNELAGSRKQGTVSCEEEQETSGDFGSGGSVVLLDDLEDERELGPKDKEGKLRVRTRAV
REDDEDEDDDKEDEVGYIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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