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Report for CCDS35001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35001.1 Public Homo sapiens 9 EQTN 24 110 108 CCDS HistoryNCBI Gene:54586Re-query CCDS DB by CCDS ID:35001.1Re-query CCDS DB by GeneID:54586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380032.8 ENSP00000369371.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380032.8Link to Ensembl Protein Viewer:ENSP00000369371.3Re-query CCDS DB by Nucleotide ID:ENST00000380032Re-query CCDS DB by Protein ID:ENSP00000369371
Original member Current member NCBI NM_020641.3 NP_065692.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020641.3Link to Protein Sequence:NP_065692.2Re-query CCDS DB by Nucleotide ID:NM_020641Re-query CCDS DB by Protein ID:NP_065692Link to BLAST:NP_065692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065692.2 294 Q9NQ60-1 294 100% 0 0

Chromosomal Locations for CCDS 35001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27284723 27284972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27286209 27286362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27289672 27289731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27291019 27291063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27292401 27292487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27294316 27294402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27296613 27296738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27296980 27297055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGAATTTTATATTGTTTATTTTTATACCTGGAGTTTTTTCCTTAAAAAGTAGCACTTTGAAGCCTACTA
TTGAAGCATTGCCTAATGTGCTACCTTTAAATGAAGATGTTAATAAGCAGGAAGAAAAGAATGAAGATCA
TACTCCCAATTATGCTCCTGCTAATGAGAAAAATGGCAATTATTATAAAGATATAAAACAATATGTGTTC
ACAACACAAAATCCAAATGGCACTGAGTCTGAAATATCTGTGAGAGCCACAACTGACCTGAATTTTGCTC
TAAAAAACGATAAAACTGTCAATGCAACTACATATGAAAAATCCACCATTGAAGAAGAAACAACTACTAG
CGAACCCTCTCATAAAAATATTCAAAGATCAACCCCAAACGTGCCTGCATTTTGGACAATGTTAGCTAAA
GCTATAAATGGAACAGCAGTGGTCATGGATGATAAAGATCAATTATTTCACCCAATTCCAGAGTCTGATG
TGAATGCTACACAGGGAGAAAATCAGCCAGATCTAGAGGATCTGAAGATCAAAATAATGCTGGGAATCTC
GTTGATGACCCTCCTCCTCTTTGTGGTCCTCTTGGCATTCTGTAGTGCTACACTGTACAAACTGAGGCAT
CTGAGTTATAAAAGTTGTGAGAGTCAGTACTCTGTCAACCCAGAGCTGGCCACGATGTCTTACTTTCATC
CATCAGAAGGTGTTTCAGATACATCCTTTTCCAAGAGTGCAGAGAGCAGCACATTTTTGGGTACCACTTC
TTCAGATATGAGAAGATCAGGCACAAGAACATCAGAATCTAAGATAATGACGGATATCATTTCCATAGGC
TCAGATAATGAGATGCATGAAAACGATGAGTCGGTTACCCGGTGA

Translation (294 aa):
MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVF
TTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNVPAFWTMLAK
AINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLRH
LSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIG
SDNEMHENDESVTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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