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Report for CCDS26466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26466.1 Public Mus musculus 13 Slc35b3 23 108 98 CCDS HistoryNCBI Gene:108652Re-query CCDS DB by CCDS ID:26466.1Re-query CCDS DB by GeneID:108652See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 26466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167513.2 ENSMUSP00000126016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167513.2Link to Ensembl Protein Viewer:ENSMUSP00000126016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167513Re-query CCDS DB by Protein ID:ENSMUSP00000126016
Original member Current member EBI ENSMUST00000225432.1 ENSMUSP00000153046.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225432.1Link to Ensembl Protein Viewer:ENSMUSP00000153046.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225432Re-query CCDS DB by Protein ID:ENSMUSP00000153046
Original member NCBI NM_001170430.1 NP_001163901.1 Updated not alive Link to Nucleotide Sequence:NM_001170430.1Link to Protein Sequence:NP_001163901.1Re-query CCDS DB by Nucleotide ID:NM_001170430Re-query CCDS DB by Protein ID:NP_001163901
Current member NCBI NM_001170430.2 NP_001163901.1 Accepted alive Link to Nucleotide Sequence:NM_001170430.2Link to Protein Sequence:NP_001163901.1Re-query CCDS DB by Nucleotide ID:NM_001170430Re-query CCDS DB by Protein ID:NP_001163901Link to BLAST:NP_001163901.1
Original member NCBI NM_001170431.2 NP_001163902.2 Updated not alive Link to Nucleotide Sequence:NM_001170431.2Link to Protein Sequence:NP_001163902.2Re-query CCDS DB by Nucleotide ID:NM_001170431Re-query CCDS DB by Protein ID:NP_001163902
Current member NCBI NM_001170431.3 NP_001163902.2 Accepted alive Link to Nucleotide Sequence:NM_001170431.3Link to Protein Sequence:NP_001163902.2Re-query CCDS DB by Nucleotide ID:NM_001170431Re-query CCDS DB by Protein ID:NP_001163902Link to BLAST:NP_001163902.2
Original member NCBI NM_134060.4 NP_598821.1 Updated not alive Link to Nucleotide Sequence:NM_134060.4Link to Protein Sequence:NP_598821.1Re-query CCDS DB by Nucleotide ID:NM_134060Re-query CCDS DB by Protein ID:NP_598821
Current member NCBI NM_134060.5 NP_598821.1 Accepted alive Link to Nucleotide Sequence:NM_134060.5Link to Protein Sequence:NP_598821.1Re-query CCDS DB by Nucleotide ID:NM_134060Re-query CCDS DB by Protein ID:NP_598821Link to BLAST:NP_598821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163901.1 369 Q922Q5 369 100% 0 0
NP_001163902.2 369 Q922Q5 369 100% 0 0
NP_598821.1 369 Q922Q5 369 100% 0 0

Chromosomal Locations for CCDS 26466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38932766 38932916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38934738 38934807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38937242 38937353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38937747 38937839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38939875 38939972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38943059 38943166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38944500 38944654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38954109 38954230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38955649 38955849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGT
CGCCGCACATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAAGTTTAGCAAGCTCAC
ACAGTTTCTCATCTGTGTGGCTGGAGTTTTTGTATTTTACCTAATTTATGGATACTTACAGGAGCTGATC
TTTTCAGTGGAAGGCTTTAAGCCTTACGGCTGGTACCTTACCTTAGTGCAGTTTGCCTTTTACTCCGTAT
TTGGCCTAATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAGAATACCAGGAAAAACCTACATGCTAAT
AGCTTTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCCAA
GTCATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAAGCGGTACA
ACCTTGCAGATGTGTCTGCCGCAGTGTGCATGAGCCTGGGCCTGATCTGGTTTACCCTCGCTGACAGCAC
AATTGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCGCTGTGTGCAGACGCTGTCATT
GGGAACGTTCAGGAGAAGGCCATGAAACTGCACAATGCTTCCAACTCGGAGATGGTTTTGTATTCCTACT
CAATCGGGTTTGTGTACATTTTGCTGGGACTGTCATGCACTAGTGGACTGGGCCCTGCAGTGGCATTTTG
TTCAAAGAACCCTGTTGGGACTTACGGCTACGCCTTCCTGTTTTCCCTCACTGGATACTTTGGGATCTCC
TTTGTTCTGGCCCTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAA
TGACCGTTGTCCTGTCCTTCCTGTTCTTTGCTAAGCCGTTCACTTTTCAGTATATATGGTCTGGCTTGTT
AGTTGTCCTTGGCATATTTCTCAATGTTTACAGCAAAAATATGGATAAAATAAGATTGCCATCGGTGTAC
AACATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTGTGTAG

Translation (369 aa):
MDLKFNNSRKYVSISVPSKTQAMSPHIKSVEDVVVLGVNLSKFSKLTQFLICVAGVFVFYLIYGYLQELI
FSVEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDRRRRIPGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQ
VIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVI
GNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGIS
FVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGIFLNVYSKNMDKIRLPSVY
NMIKKAMDMKKSRTLAQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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