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Report for CCDS39863.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39863.2 Public Mus musculus 7 Fbxo17 23 108 98 CCDS HistoryNCBI Gene:50760Re-query CCDS DB by CCDS ID:39863.2Re-query CCDS DB by GeneID:50760See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39863.1
The coding region has been updated to represent an alternative and longer C-terminus that is more supported by available transcript and homology data. The extension results in the completion of the F-box associated (FBA) domain.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39863.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032818.12 ENSMUSP00000032818.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032818.12Link to Ensembl Protein Viewer:ENSMUSP00000032818.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032818Re-query CCDS DB by Protein ID:ENSMUSP00000032818
Original member Current member EBI ENSMUST00000108278.8 ENSMUSP00000103913.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108278.8Link to Ensembl Protein Viewer:ENSMUSP00000103913.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108278Re-query CCDS DB by Protein ID:ENSMUSP00000103913
Original member Current member EBI ENSMUST00000167118.1 ENSMUSP00000130422.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167118.1Link to Ensembl Protein Viewer:ENSMUSP00000130422.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167118Re-query CCDS DB by Protein ID:ENSMUSP00000130422
Original member Current member NCBI NM_015796.2 NP_056611.2 Accepted alive Link to Nucleotide Sequence:NM_015796.2Link to Protein Sequence:NP_056611.2Re-query CCDS DB by Nucleotide ID:NM_015796Re-query CCDS DB by Protein ID:NP_056611Link to BLAST:NP_056611.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056611.2 286 Q9QZM8-1 286 100% 0 0

Chromosomal Locations for CCDS 39863.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28732500 28732872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28733429 28733540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28735277 28735372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28736068 28736203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28737339 28737482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGGAGCGCGGCCCTCGCGACGGCAGATGACTGAAGCTCGGCGCCTGGCTCTAACCAAGCTGCCCCCTG
AGCTGCTGGTGCAGGTGCTGAGCCACGTGCCGCCTCGCGCGTTAGTGACCCGCTGCCGGCCAGTGTGCCG
GGCCTGGCGCGACCTGGTAGATGGCCCAAGTATATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAG
GGCAGAGCCCTCTACGCCTTGGCCCAGCGCTGTCCCGCCGACGCCGACGCCGACGCCGACGCCGACGGCA
ACCGCCACGACGAGTTCCCATTCTGCGCTCTGGCCCGATTCTGCCTGAGAGCGCCGTTTGGCCGCAACCT
CATCCACAACTCCTGCGGAGAACAGGGCTTCAGAGGTTGGGAAGTGGAGCACGGCGGAAATGGTTGGGCC
GTGGAAAAGAATTTGACGCTGGTACCAGGGGCTCCTTCCCAGACCTGCTTTGTGACTTCTTTTGAGTGGT
GCTCCAAGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTATGGCAGGAGCTGTTGGACAGTGGCCAGAT
TGAGATCTGCATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACCGGCTTCGAGTTCGC
CTACTGGATGAATATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTG
AGAGGAGCTGCCGACAAGTCTCTCACGTCTTCACTAACTTTGGCAAGGGCATCCGGTATGTGTCTTTTGA
GCAGTATGGGAGAGACACGCGTTCCTGGGTGGGACACTACGGTGCCCTTGTAACTCACTCCAGTGTGCGG
GTCAGGATCCGTCTGTCCTAG

Translation (286 aa):
MGARPSRRQMTEARRLALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPSIWLLQLARDRSAE
GRALYALAQRCPADADADADADGNRHDEFPFCALARFCLRAPFGRNLIHNSCGEQGFRGWEVEHGGNGWA
VEKNLTLVPGAPSQTCFVTSFEWCSKRQLVDLVKEGVWQELLDSGQIEICIADWWGARENCGCIYRLRVR
LLDEYENEVVKFSASPNPVLQWTERSCRQVSHVFTNFGKGIRYVSFEQYGRDTRSWVGHYGALVTHSSVR
VRIRLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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