NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16535.1 Public Mus musculus 2 Or4f56 23 108 98 CCDS HistoryNCBI Gene:258396Re-query CCDS DB by CCDS ID:16535.1Re-query CCDS DB by GeneID:258396See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099608.1 ENSMUSP00000097203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099608.1Link to Ensembl Protein Viewer:ENSMUSP00000097203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099608Re-query CCDS DB by Protein ID:ENSMUSP00000097203
Original member Current member EBI ENSMUST00000213405.1 ENSMUSP00000149215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213405.1Link to Ensembl Protein Viewer:ENSMUSP00000149215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213405Re-query CCDS DB by Protein ID:ENSMUSP00000149215
Original member Current member EBI ENSMUST00000213737.1 ENSMUSP00000149852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213737.1Link to Ensembl Protein Viewer:ENSMUSP00000149852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213737Re-query CCDS DB by Protein ID:ENSMUSP00000149852
Original member Current member NCBI NM_146401.2 NP_666513.2 Accepted alive Link to Nucleotide Sequence:NM_146401.2Link to Protein Sequence:NP_666513.2Re-query CCDS DB by Nucleotide ID:NM_146401Re-query CCDS DB by Protein ID:NP_666513Link to BLAST:NP_666513.2

Chromosomal Locations for CCDS 16535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111872915 111873853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATCAGAGCAAACTATTCTGCAGTGTCTGAATTTGTGCTGTTGGGGCTCTCAAATTCCTGGGAGATCC
AGGTTTTTATTTTTTTCTTTACTTGTCTGTTCTATGTATCCAGTTTGACAGGAAACTTCATCATAGTTGT
TACAGTCACTTCTGATCCCTACTTGCATTCACCCATGTACTTTCTACTGGCTAATCTCTCTGTTATTGAT
CTTATATTTTGTTCCATTGCAGCACCCAAAATGATTTGTGATCTTTTCAGAAAGCAGAAAGTCATTTCCT
TTGGAGGCTGTATCAGTCAGATCTTTTTTAGTCATGCTGTTGGGGGCACTGAGATGGTACTGCTCATAGC
CATGGCCTTTGACAGGTATGTGGCCATATGCAAACCGTTACGCTATCTGACCATCATGAGCCCACGGATG
TGCCTGCTAATATTAGTTGCTGCTTGGATCATTGGTCTCATCCATTCATCAGCCCAATTGGCTTTTGTTA
TAAACTTGCCATTCTGTGGCCCTAACATACTAGACAGCTTTTATTGTGACATACCACGACTTGTCAAGCT
TGCATGCACAGATACTTATAAACTGGAGCTCATGATTACTGCCAATAGTGGGTTCATTTCCTTGATTGCA
TTCTTTTTACTCATCATCTCCTATGTCTTTCTTCTCACCACTGTCCAGAAGCAGTCCTCAGGATGTTCAT
CCAAGGCCCTTTCTACTCTGTTGGCTCATATTACAGTTGTAGTTTTGTTTTTTGGCCCATTGATTTTTTT
CTATGTGTGCCCTTCTCCTTCAACACATGTAGATAAATTTCTAGCTATATTTGATGCAGTTTTGACTCCC
TTTCTAAATCCAATTATCTATACATTGAGGAACAGAGATATGAAGATAGCCATCAGGAAAGTGTTTTGTC
AATGCCTGGCTTTTAGAAAATCAATGTAG

Translation (312 aa):
MIRANYSAVSEFVLLGLSNSWEIQVFIFFFTCLFYVSSLTGNFIIVVTVTSDPYLHSPMYFLLANLSVID
LIFCSIAAPKMICDLFRKQKVISFGGCISQIFFSHAVGGTEMVLLIAMAFDRYVAICKPLRYLTIMSPRM
CLLILVAAWIIGLIHSSAQLAFVINLPFCGPNILDSFYCDIPRLVKLACTDTYKLELMITANSGFISLIA
FFLLIISYVFLLTTVQKQSSGCSSKALSTLLAHITVVVLFFGPLIFFYVCPSPSTHVDKFLAIFDAVLTP
FLNPIIYTLRNRDMKIAIRKVFCQCLAFRKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH