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Report for CCDS12642.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12642.2 Public Homo sapiens 19 BCL3 24 110 108 CCDS HistoryNCBI Gene:602Re-query CCDS DB by CCDS ID:12642.2Re-query CCDS DB by GeneID:602See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12642.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000164227.10 ENSP00000164227.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000164227.10Link to Ensembl Protein Viewer:ENSP00000164227.5Re-query CCDS DB by Nucleotide ID:ENST00000164227Re-query CCDS DB by Protein ID:ENSP00000164227
Original member Current member NCBI NM_005178.5 NP_005169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005178.5Link to Protein Sequence:NP_005169.2Re-query CCDS DB by Nucleotide ID:NM_005178Re-query CCDS DB by Protein ID:NP_005169Link to BLAST:NP_005169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005169.2 454 P20749 454 100% 0 0

Chromosomal Locations for CCDS 12642.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44748791 44749046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44751227 44751380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44756232 44756340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44757017 44757221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44757327 44757415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44757646 44757723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44758246 44758413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44758724 44758841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44759428 44759615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCCCCGATGCCCCGCGGGGGCCATGGACGAGGGGCCCGTGGACCTGCGCACCCGGCCCAAGGCCGCCG
GACTCCCGGGCGCCGCGCTGCCGCTCCGCAAGCGCCCGCTGCGCGCGCCCTCCCCGGAGCCCGCCGCTCC
CCGCGGCGCTGCGGGCCTTGTCGTCCCCCTGGACCCTCTGCGCGGCGGCTGCGACCTGCCGGCGGTCCCC
GGGCCCCCCCACGGCCTGGCCCGGCCGGAGGCGCTTTACTACCCCGGAGCCTTACTGCCTTTGTACCCCA
CTCGGGCCATGGGCTCCCCGTTTCCTCTGGTGAACCTGCCTACACCCCTATACCCCATGATGTGCCCCAT
GGAACACCCCCTTTCTGCTGACATCGCCATGGCCACCCGTGCAGATGAGGACGGAGACACGCCTCTCCAT
ATTGCTGTGGTGCAGGGTAACCTGCCAGCTGTGCACCGGCTGGTCAACCTCTTCCAGCAGGGGGGCCGGG
AGCTCGACATCTACAACAACCTACGGCAGACACCGCTCCACCTGGCTGTGATCACCACATTACCGTCTGT
GGTCCGGCTCCTGGTGACAGCTGGTGCCAGCCCCATGGCGCTGGACCGCCATGGCCAGACGGCCGCTCAC
CTGGCGTGCGAGCACCGCAGCCCGACCTGCCTGCGAGCCCTGCTGGACAGCGCAGCTCCGGGCACGTTGG
ACCTGGAGGCCCGCAATTATGACGGGCTCACCGCCCTGCACGTGGCAGTGAACACCGAGTGCCAAGAAAC
CGTGCAGCTCTTGCTAGAGCGCGGTGCCGACATCGACGCAGTGGACATTAAGAGCGGCCGCTCCCCGCTC
ATCCACGCCGTGGAAAACAACAGCCTTAGCATGGTGCAGCTGCTGCTGCAGCACGGCGCCAACGTGAACG
CGCAAATGTACTCCGGCAGCTCCGCCCTGCACTCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCAC
GCTGGTCCGCAGCGGCGCTGACAGCAGCCTCAAGAACTGCCACAACGACACGCCGCTCATGGTGGCGCGC
AGCCGCAGGGTCATCGACATCCTGAGGGGGAAGGCCACCCGGCCTGCTTCCACCTCCCAGCCAGACCCCT
CCCCTGACCGGAGCGCCAACACCTCCCCCGAGAGCAGCAGCCGCCTCAGCTCCAATGGTCTTCTCTCCGC
ATCACCATCCTCCTCACCCTCCCAGTCTCCCCCCAGGGACCCCCCTGGATTCCCCATGGCTCCTCCCAAT
TTCTTCCTTCCTTCCCCATCTCCACCCGCCTTCCTGCCCTTTGCTGGGGTCCTCCGAGGCCCTGGCCGGC
CGGTGCCCCCCTCCCCAGCTCCAGGAGGCAGCTGA

Translation (454 aa):
MPRCPAGAMDEGPVDLRTRPKAAGLPGAALPLRKRPLRAPSPEPAAPRGAAGLVVPLDPLRGGCDLPAVP
GPPHGLARPEALYYPGALLPLYPTRAMGSPFPLVNLPTPLYPMMCPMEHPLSADIAMATRADEDGDTPLH
IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH
LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL
IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR
SRRVIDILRGKATRPASTSQPDPSPDRSANTSPESSSRLSSNGLLSASPSSSPSQSPPRDPPGFPMAPPN
FFLPSPSPPAFLPFAGVLRGPGRPVPPSPAPGGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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