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Report for CCDS39472.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39472.2 Public Mus musculus 6 Fam131b 23 108 98 CCDS HistoryNCBI Gene:76156Re-query CCDS DB by CCDS ID:39472.2Re-query CCDS DB by GeneID:76156See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39472.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39472.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143278.7 ENSMUSP00000116779.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143278.7Link to Ensembl Protein Viewer:ENSMUSP00000116779.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143278Re-query CCDS DB by Protein ID:ENSMUSP00000116779
Original member Current member NCBI NM_029528.5 NP_083804.3 Accepted alive Link to Nucleotide Sequence:NM_029528.5Link to Protein Sequence:NP_083804.3Re-query CCDS DB by Nucleotide ID:NM_029528Re-query CCDS DB by Protein ID:NP_083804Link to BLAST:NP_083804.3

Chromosomal Locations for CCDS 39472.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42318159 42318631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42318851 42318994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42320788 42320985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42321250 42321343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42321591 42321626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42321907 42322016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42324442 42324469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGGCTGCATCGGCTCGCGGACTGTGGGGAACGAAGTGATTGCCGTGGACTGGAAAGGCCTCAAGGATG
TTGATCAGATCAACATGGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCATCGGCCTTCGACAGAGCA
AACACGAACAGATTTCTCCTGGGACGGCATCAATCTTTCCATGGAGGACACCACTTCCATCCTTCCGAAG
CTTAAGCGAAACTCTAATGCCTATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGGGATCTCGAGGA
GCATGAAGGACCATGTGACAAAGCCTACCGCCATGGGCCAAGGCCGGGTGGCCCACATGATTGAGTGGCA
GGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGACGCC
TACTCTGACCTCAGTGATGGCGAGAAGGAGGCACGTTTCCTAGCAGGTGTCATGGAACAGTTTGCTATTT
CTGAGGCTACACTTATGGCTTGGTCTTCCATGGATGGTGAGGACATGAGTGTCAATTCTACCCAGGAGCC
ACTGGACTGCAACTACAGTGACAACTACCAGGAGCTGATGGAAAGTCAGGATGCACTAGCTCAAGCCCCA
ATGGATGGATGGCCTCACTCCTACGTGTCACAGGGGATGTACTGTCTGGGGTCATCTGACGCCTGGGAAG
CAAGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGATCCTATCTTGGCCCTGCATTTGATGACTCACA
GCCGAGCCTGCATGACATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTTG
TTGGGGGTAGACACTGACTGGGCATCAGAGGTTGGTGGGGTGGAACTGGCCAGGGGACCTGTAGAGGAAG
AGAAGAGACCACTGGCCCCTGAGGAGGAAGAAGATGCAGGATGCCGGGATCTGGAGTCACTTTCCCCACG
AGAGGACCCAGAGATGTCCACTGCTCTCAGCCGGAAGGTGTCTGATGTCACATCCTCAGGTGTGCAGTCC
TTTGATGAGGAGGAAGGGGATGCCAACAACTAG

Translation (360 aa):
MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPK
LKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPTIQPQHSHEAVRRDTDA
YSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQDALAQAP
MDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQPASGYSAQEPPPL
LGVDTDWASEVGGVELARGPVEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQS
FDEEEGDANN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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