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Report for CCDS48997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48997.1 Public Mus musculus 11 Cyth1 23 108 98 CCDS HistoryNCBI Gene:19157Re-query CCDS DB by CCDS ID:48997.1Re-query CCDS DB by GeneID:19157See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017276.13 ENSMUSP00000017276.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017276.13Link to Ensembl Protein Viewer:ENSMUSP00000017276.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000017276Re-query CCDS DB by Protein ID:ENSMUSP00000017276
Original member NCBI NM_001112699.1 NP_001106169.1 Updated not alive Link to Nucleotide Sequence:NM_001112699.1Link to Protein Sequence:NP_001106169.1Re-query CCDS DB by Nucleotide ID:NM_001112699Re-query CCDS DB by Protein ID:NP_001106169
Current member NCBI NM_001112699.2 NP_001106169.1 Accepted alive Link to Nucleotide Sequence:NM_001112699.2Link to Protein Sequence:NP_001106169.1Re-query CCDS DB by Nucleotide ID:NM_001112699Re-query CCDS DB by Protein ID:NP_001106169Link to BLAST:NP_001106169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106169.1 397 Q9QX11-2 397 100% 0 0

Chromosomal Locations for CCDS 48997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118166016 118166094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118169016 118169170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118170826 118170897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118177220 118177296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118182220 118182331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118182765 118182913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118183882 118183994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118184972 118185052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118185381 118185499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118185760 118185826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118192397 118192461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118193615 118193697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118248439 118248460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGAGGACGATGACAGCTATGTCCCCAGTGACCTGACTGCAGAAGAGCGTCAAGAACTGGAGAACATCC
GGCGGAGGAAGCAGGAGCTGCTGGCTGACATCCAGAGGCTAAAGGAAGAGATAGCAGAAGTTGCTAATGA
AATTGAAAGCCTGGGATCCACAGAGGAAAGGAAAAACATGCAGAGGAACAAACAGGTAGCCATGGGCAGA
AAGAAATTTAACATGGATCCTAAAAAGGGGATCCAGTTCTTAATCGAGAATGGCCTGCTGAAGAACACTT
GTGAGGACATCGCCCAGTTCCTGTATAAAGGGGAGGGGCTCAACAAGACAGCCATCGGCGACTACCTTGG
GGAGAGGGATGAGTTCAGCATCCAGGTCCTGCATGCGTTTGTGGAACTGCACGAGTTCACCGACCTGAAC
CTCGTCCAGGCCTTGCGGCAGTTCCTGTGGAGCTTCCGGCTCCCTGGAGAGGCCCAGAAGATTGACCGGA
TGATGGAGGCCTTTGCCCAGCGGTACTGTCAGTGCAATACTGGGGTGTTCCAGTCTACAGACACCTGCTA
TGTCCTGTCCTTCGCAATCATAATGCTGAACACCAGCCTACACAACCCCAATGTCAAAGACAAGCCTACG
GTGGAGAGATTCATCGCCATGAACCGAGGCATCAACGACGGAGGAGACCTGCCGGAGGAGCTGCTCCGGA
ATCTCTATGAGAGCATCAAAAACGAGCCCTTTAAAATCCCCGAAGATGATGGGAATGACCTCACACACAC
TTTCTTCAATCCAGACCGAGAGGGCTGGCTGCTCAAGCTCGGTGGCAGGGTAAAGACCTGGAAGAGGCGC
TGGTTCATTCTGACTGACAACTGCCTTTACTACTTTGAATACACCACGGACAAAGAGCCCCGCGGGATTA
TCCCCCTGGAGAACCTGAGTATCCGAGAAGTGGAGGACTCCAAAAAGCCGAACTGCTTTGAGCTTTATAT
CCCTGACAATAAAGACCAGGTGATTAAGGCCTGTAAGACAGAGGCGGACGGGCGAGTGGTGGAAGGGAAC
CACACTGTGTACCGCATCTCAGCCCCAACTCCGGAAGAGAAGGAAGACTGGATCAAATGCATCAAGGCTG
CCATCAGCAGAGACCCTTTCTACGAGATGCTTGCAGCACGGAAAAAGAAGGTCTCCTCCACAAAGAGACA
CTGA

Translation (397 aa):
MEDDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQRNKQVAMGR
KKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFSIQVLHAFVELHEFTDLN
LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPT
VERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRR
WFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGN
HTVYRISAPTPEEKEDWIKCIKAAISRDPFYEMLAARKKKVSSTKRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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