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Report for CCDS40887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40887.1 Public Mus musculus X Zfp182 23 108 98 CCDS HistoryNCBI Gene:319535Re-query CCDS DB by CCDS ID:40887.1Re-query CCDS DB by GeneID:319535See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040628.5 ENSMUSP00000045005.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040628.5Link to Ensembl Protein Viewer:ENSMUSP00000045005.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040628Re-query CCDS DB by Protein ID:ENSMUSP00000045005
Original member Current member EBI ENSMUST00000115333.8 ENSMUSP00000110989.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115333.8Link to Ensembl Protein Viewer:ENSMUSP00000110989.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115333Re-query CCDS DB by Protein ID:ENSMUSP00000110989
Original member Current member NCBI NM_001013387.2 NP_001013405.2 Accepted alive Link to Nucleotide Sequence:NM_001013387.2Link to Protein Sequence:NP_001013405.2Re-query CCDS DB by Nucleotide ID:NM_001013387Re-query CCDS DB by Protein ID:NP_001013405Link to BLAST:NP_001013405.2
Original member Current member NCBI NM_001111076.1 NP_001104546.1 Accepted alive Link to Nucleotide Sequence:NM_001111076.1Link to Protein Sequence:NP_001104546.1Re-query CCDS DB by Nucleotide ID:NM_001111076Re-query CCDS DB by Protein ID:NP_001104546Link to BLAST:NP_001104546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013405.2 627 Q6P560 627 99.8405% 0 1
NP_001104546.1 627 Q6P560 627 99.8405% 0 1

Chromosomal Locations for CCDS 40887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 21030064 21031652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21036337 21036471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21036628 21036772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21060503 21060517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGCCAAACCCCAGGAACCAGTGACATTTGAGGATGTAGCTGTGGATTTCACTCAGGAGGAGTGGCAAT
ACCTGAACTCTCCACAGAGGACCCTGTACCGAGATGTGATGCTTGAAACCTACAGCAACCTCGTTTCTGT
GTGTGAGGTGGCTTCCATAGGCTCTGAAGACCAAGGAGGTATCTCTCATTTATCATCCTTAGAGCAGCAG
GTTACTAAGCCAGATCTCATTATCAAGCTGGAGGTAGAAGAACCAGACCCAGAAGATGGAGAAATTCCAG
TTTGGAGCTTTCCAGAAGTCTGCCAAATTAATGAACAATTTGAGAGGCAACATCAAGATAAACAAGATAA
GTATCTGTTGATGCAAGTTAGACTCCCTAATGACAACATAATTACCAAGAGTGGCCAGAACTATACTGAT
TTTAGAAATGCATTTCATCTGAGCACAGGCCTTCTTGTTCCAATGCAGAGATCCCATAAATTTGAATCAT
TTGGAAATACTATGGTAGACAATTTAAACTTGCTTACTGGAAGCTCTACAGAAAATAAACATGATACTGG
GTGTGCAAAATTTTTCTTCCATACAGAATATGAAAACCCTAATTTCATAGTGAAACCCTGTGGATATAAA
GAATATGAGAAAACCCTCAGGCAAAAGAAAGGTCTTAGCCTTCATCAGAGAATTAAAAATGGAGAGAGGC
CTTTTGAATGTACTGCATGTCAGAAAACCTTCAGCAAAAAGTCCCACCTCATTGTCCATTGGAGAACTCA
TACAGGAGAGAAACCATTTGAATGTTCTGAGTGTGGGAAAGCCTTTAGCCAAAAGTCTCAGCTCATTATA
CACCTCAGAACCCACACAGGAGAAAGACCCTTTGCATGTCCAGAATGTGGCAAAGCCTTCAGAGAAAAGT
CAACTGTCATCATCCATTATAGAACTCATACAGGAGAGAAGCCTTATGAATGTAATCAATGTGGGAAAGC
CTTTACTCAGAAATCAAACCTCATTGTTCATCAAAAAACCCACACAGGAGAAAAAACCTATGAGTGTACC
AAGTGTGGGGAATCTTTCATACAGAAGCTTGACCTAATTATACACCATAGTACTCATACAGGAAAGAAGC
CTCATGAATGTAGTGAGTGTAAGAAAACGTTCAGTGATAAGTCAACCCTCGTTATACATCAGAGAACTCA
CACTGGAGAGAAACCTCATAAGTGTACTGAATGTGGGAAATCTTTCAACGAAAAGTCAACCCTCATTGTG
CACCAAAGAATTCACACTGGTGAGAAGCCCTATGAATGTGATGTGTGTGGGAAAACTTTCACCCAAAAAT
CAAATCTGGGTGTGCATCAAAGAACTCATTCAGGAGAGAAACCATTTGAGTGTAATGAATGTGAGAAAGC
GTTCTCTCAGAAATCCTACCTCATGCTACATCAACGAGGCCACACTGGCGAGAAGCCCTATGAATGCAAT
GAATGTGAGAAGGCATTTTCCCAGAAGTCCTATCTCATTATACATCAAAGAACTCATACAGAAGAAAAAC
CCTACAAATGTAATGAGTGTGGAAAGGCCTTTCGAGAAAAGTCAAAGCTCATTATCCATCAGAGAATCCA
CACAGGAGAGAAACCCTATGAATGCCTTGTGTGCTGGAAAGCTTTCAGCCAGAAGTCGCAGCTCATTATC
CATCAGAGAACACACACAGGAGAAAAGCCCTATGAATGCACAGAATGTGGCAAAGCATTCAGGGAAAAAT
CGACATTCACTGTACATCAAAGAACTCACACTGGAGAGAAGCCCTATAAGTGTATAGAATGTGGGAAAGC
CTTTACCCAGAAATCCAACCTTATTGTACATCAGAGGACGCATACAGTAAAGAAAGCCCATTGA

Translation (627 aa):
MAKPQEPVTFEDVAVDFTQEEWQYLNSPQRTLYRDVMLETYSNLVSVCEVASIGSEDQGGISHLSSLEQQ
VTKPDLIIKLEVEEPDPEDGEIPVWSFPEVCQINEQFERQHQDKQDKYLLMQVRLPNDNIITKSGQNYTD
FRNAFHLSTGLLVPMQRSHKFESFGNTMVDNLNLLTGSSTENKHDTGCAKFFFHTEYENPNFIVKPCGYK
EYEKTLRQKKGLSLHQRIKNGERPFECTACQKTFSKKSHLIVHWRTHTGEKPFECSECGKAFSQKSQLII
HLRTHTGERPFACPECGKAFREKSTVIIHYRTHTGEKPYECNQCGKAFTQKSNLIVHQKTHTGEKTYECT
KCGESFIQKLDLIIHHSTHTGKKPHECSECKKTFSDKSTLVIHQRTHTGEKPHKCTECGKSFNEKSTLIV
HQRIHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECN
ECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECLVCWKAFSQKSQLII
HQRTHTGEKPYECTECGKAFREKSTFTVHQRTHTGEKPYKCIECGKAFTQKSNLIVHQRTHTVKKAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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