NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17254.1 Public Mus musculus 3 Cyp7b1 23 108 98 CCDS HistoryNCBI Gene:13123Re-query CCDS DB by CCDS ID:17254.1Re-query CCDS DB by GeneID:13123See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035625.6 ENSMUSP00000037487.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035625.6Link to Ensembl Protein Viewer:ENSMUSP00000037487.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035625Re-query CCDS DB by Protein ID:ENSMUSP00000037487
Original member NCBI NM_007825.4 NP_031851.3 Updated not alive Link to Nucleotide Sequence:NM_007825.4Link to Protein Sequence:NP_031851.3Re-query CCDS DB by Nucleotide ID:NM_007825Re-query CCDS DB by Protein ID:NP_031851
Current member NCBI NM_007825.5 NP_031851.3 Accepted alive Link to Nucleotide Sequence:NM_007825.5Link to Protein Sequence:NP_031851.3Re-query CCDS DB by Nucleotide ID:NM_007825Re-query CCDS DB by Protein ID:NP_031851Link to BLAST:NP_031851.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031851.3 507 Q60991 507 100% 0 0

Chromosomal Locations for CCDS 17254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 18072457 18072753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 18079305 18079480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 18096523 18096729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 18097204 18097794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 18103701 18103837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 18243088 18243203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGCAGGGAGCCACGACCCTAGATGCCGCCTCGCCAGGGCCTCTCGCCCTCCTAGGCCTTCTCTTTGCCG
CCACCTTACTGCTCTCGGCCCTGTTCCTCCTTACCCGGCGCACCAGGCGCCCTCGTGAACCACCCTTGAT
AAAAGGTTGGCTTCCTTATCTTGGCATGGCCCTGAAATTCTTTAAGGATCCGTTAACTTTCTTGAAAACT
CTTCAAAGGCAACATGGTGACACTTTCACTGTCTTCCTTGTGGGGAAGTATATAACATTTGTTCTGAACC
CTTTCCAGTACCAGTATGTAACGAAAAACCCAAAACAATTAAGCTTTCAGAAGTTCAGCAGCCGATTATC
AGCGAAAGCCTTCTCTGTAAAGAAGCTGCTTACTGATGACGACCTTAATGAAGACGTTCACAGAGCCTAT
CTACTTCTACAAGGCAAACCTTTGGATGCTCTTCTGGAAACTATGATCCAAGAAGTAAAAGAATTATTTG
AGTCCCAACTGCTAAAAATCACAGATTGGAACACAGAAAGAATATTTGCATTCTGTGGCTCACTGGTATT
TGAGATCACATTTGCGACTCTATATGGAAAAATTCTTGCTGGTAACAAGAAACAAATTATCAGTGAGCTA
AGGGATGATTTTTTTAAATTTGATGACATGTTCCCATACTTAGTATCTGACATACCTATTCAGCTTCTAA
GAAATGAAGAATCTATGCAGAAGAAAATTATAAAATGCCTCACATCAGAAAAAGTAGCTCAGATGCAAGG
ACAGTCAAAAATTGTTCAGGAAAGGCAAGATCTGCTGAAAAGATACTATAGGCATGACGATCCTGAAATA
GGAGCACATCATCTTGGCTTTCTCTGGGCCTCTCTAGCAAACACCATTCCAGCTATGTTCTGGGCAATGT
ATTATATTCTTCGGCATCCTGAAGCTATGGAAGCCCTGCGTGACGAAATTGACAGTTTCCTGCAGTCAAC
AGGTCAAAAGAAAGGACCTGGAATTTCAGTCCACTTCACCAGAGAACAATTGGACAGCTTGGTCTGCCTG
GAAAGCACTATTCTTGAGGTTCTGAGGCTGTGCTCATACTCCAGCATCATCCGAGAAGTGCAGGAGGATA
TGAATCTCAGCTTAGAGAGTAAGAGTTTCTCTCTGCGGAAAGGAGATTTTGTAGCCCTCTTTCCTCCACT
CATACACAATGACCCGGAAATCTTCGATGCTCCAAAGGAATTTAGGTTCGATCGCTTCATAGAAGATGGT
AAGAAGAAAAGCACGTTTTTCAAAGGAGGGAAGAAGCTGAAGACTTACGTTATGCCTTTTGGACTCGGAA
CAAGCAAATGTCCAGGGAGATATTTTGCAGTGAACGAAATGAAGTTACTGCTGATTATGCTTTTAACTTA
TTTTGATTTAGAAATTATCGACAGGAAGCCTATAGGGCTAAATCACAGTCGGATGTTTTTAGGTATTCAG
CACCCCGATTCTGCCGTCTCCTTTAGGTACAAAGCAAAATCTTGGAGAAGCTGA

Translation (507 aa):
MQGATTLDAASPGPLALLGLLFAATLLLSALFLLTRRTRRPREPPLIKGWLPYLGMALKFFKDPLTFLKT
LQRQHGDTFTVFLVGKYITFVLNPFQYQYVTKNPKQLSFQKFSSRLSAKAFSVKKLLTDDDLNEDVHRAY
LLLQGKPLDALLETMIQEVKELFESQLLKITDWNTERIFAFCGSLVFEITFATLYGKILAGNKKQIISEL
RDDFFKFDDMFPYLVSDIPIQLLRNEESMQKKIIKCLTSEKVAQMQGQSKIVQERQDLLKRYYRHDDPEI
GAHHLGFLWASLANTIPAMFWAMYYILRHPEAMEALRDEIDSFLQSTGQKKGPGISVHFTREQLDSLVCL
ESTILEVLRLCSYSSIIREVQEDMNLSLESKSFSLRKGDFVALFPPLIHNDPEIFDAPKEFRFDRFIEDG
KKKSTFFKGGKKLKTYVMPFGLGTSKCPGRYFAVNEMKLLLIMLLTYFDLEIIDRKPIGLNHSRMFLGIQ
HPDSAVSFRYKAKSWRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH