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Report for CCDS90454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90454.1 Public Mus musculus 8 Nfatc3 23 108 98 CCDS HistoryNCBI Gene:18021Re-query CCDS DB by CCDS ID:90454.1Re-query CCDS DB by GeneID:18021See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211991.1 ENSMUSP00000148556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211991.1Link to Ensembl Protein Viewer:ENSMUSP00000148556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211991Re-query CCDS DB by Protein ID:ENSMUSP00000148556
Original member Current member NCBI NM_001368797.1 NP_001355726.1 Accepted alive Link to Nucleotide Sequence:NM_001368797.1Link to Protein Sequence:NP_001355726.1Re-query CCDS DB by Nucleotide ID:NM_001368797Re-query CCDS DB by Protein ID:NP_001355726Link to BLAST:NP_001355726.1

Chromosomal Locations for CCDS 90454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106058840 106058918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106078604 106079741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106083811 106083973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106092032 106092231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106096164 106096336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106099072 106099212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106100934 106100989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106104025 106104151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106108125 106109129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106119322 106119422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3183 nt):
ATGCAGAGGCCAAGAAGGGTACTTTTCTCTGTGTCTGCTCAACTTCCGTCAAGGACCAGACCTGGTCCCT
CTGATTTAGATCTTGAACCAGATGATTGTGCATCCATTTACATCTTTAATGTAGATCCACCTCCATCTAC
TTTAAACTCATCCCTTGGCTTACCACATCATGGACTGCTGCAGTCTCACTCTTCTGTTTTGTCACCATCA
TTTCAGCTCCAAGGTTACAAAAATTATGAAGGAACTGGTGATATTTCTGAATCTAAATATAGTCCATTAG
GTGGTCCTAAACCCTTTGAGTGCCCAAGTATTCAAATCACATCCATTTCTCCTAACTGTCATCAAGGAAC
AGATGCTCATGAAGATGACCTACATATAAATGACCCAGAAAGGGAATATTTGGAAAGGCCTTCTAGAGAT
CATCTCTATCTTCCACTTGAGCCATCCTACCGGGAATCTTCCCTCAGTCCTAGTCCTGCCAGCAGCATTT
CTTCTAGGAGCTGGTTCTCAGATGCATCTTCTTGTGAATCTCTCTCCCACATTTATGATGATGTGGACTC
AGAGTTGAATGAAGCTGCTGCACGATTCACTCTTGGTTCACCTCTGACTTCTCCAGGTGGCTCTCCAGGA
GGTTGCCCTGGAGAAGAGTCCTGGCATCAACAGTATGGATCTGGACACTCCTTGTCACCTAGGCAATCTC
CTTGCCACTCTCCTAGATCTAGTATCACTGATGAGAATTGGCTGAGCCCCAGACCAGCCTCAGGACCCTC
ATCAAGGCCCACTTCTCCCTGTGGTAAACGACGGCACTCCAGTGCTGAAGTATGTTATGCTGGTTCCCTT
TCACCCCATCACTCGCCTGTTCCATCCCCTGGTCACTCTCCTAGAGGAAGTGTAACAGAAGATACCTGGC
TCACTGCTCCTGTCCACACTGGATCAGGCCTCAGCCCTGCACCGTTTCCATTTCAGTACTGTGTAGAGAC
TGACATCCCTTTGAAAACAAGGAAGACTTCTGAAGATCAAGCTGCCATACTACCAGGAAAATTAGAGATC
TGTTCAGATGATCAAGGGAACTTATCCCCTTCCCGGGAGACATCAGTAGATGATGGCCTTGGATCTCAGT
ATCCTTTAAAGAAAGATTCATCTGGTGACCAATTTCTTTCAGTTCCTTCACCCTTTACCTGGAGCAAACC
AAAGCCTGGCCACACCCCTATATTTCGCACATCTTCATTACCTCCATTAGACTGGCCTTTACCAACTCAC
TTTGGACAATGTGAATTGAAAATAGAAGTGCAACCTAAAACTCACCATAGAGCCCATTATGAAACTGAAG
GTAGCCGAGGGGCAGTGAAAGCCTCTACTGGTGGCCATCCTGTTGTGAAGCTCCTGGGCTATAGTGAAAA
GCCAATAAATCTACAGATGTTTATTGGAACAGCCGATGATAGATATTTACGACCTCATGCATTTTACCAG
GTGCATCGGATTACTGGAAAGACAGTTGCTACTGCAAGTCAAGAGATAATAATCGCCAGCACAAAAGTTC
TGGAAATCCCACTTCTACCTGAAAATAATATGTCAGCGAGTATTGACTGTGCAGGTATTTTAAAGCTCCG
CAACTCAGATATAGAACTTCGAAAAGGAGAAACTGATATTGGCAGAAAAAATACTAGAGTCCGACTTGTA
TTTCGTGTGCACATCCCACAGCCCAGTGGAAAAGTTCTTTCTCTACAGATAGCATCTATTCCTGTTGAGT
GCTCTCAGCGATCTGCTCAAGAACTCCCTCATATTGAGAAGTACAGTATCAACAGTTGCTCTGTCAATGG
AGGCCACGAAATGATTGTGACTGGATCTAATTTTCTTCCAGAATCCAAAATAATTTTTCTTGAAAAAGGA
CAAGATGGAAGACCTCATTGGGAGGCTGAAGGAAAAATAATCAGAGAAAAATGTCAAGGGGCTCACATTG
TCCTTGAAGTTCCTCCCTATCATAACCCAGCAGTTACATCTGCCGTGCAGGTGCACTTTTATCTTTGCAA
TGGCAAGAGGAAAAAAAGCCAGTCTCAACGTTTTACTTACACACCAGTTTTGATGAAGCAAGAACAAAGA
GAAGACACAGATTTGCCTTCAGTTCCATCTTTGCCTGTGCCTCATTCTGCCCAGGCCCAGAGGCCCTCCT
CAGAGACAGGGCACCCCCATGACCGTGCGATGTCAGCACCGGGAAGCCTGCTTTGTCAAGTGCAGCCAGC
ATATACATCTATGGTAGCCTCCACCCATTTGCCACAGTTGCAGTGTAGGGATGAAGGTGCTGGTAAAGAG
CAGCACATAGCAACATCTTCAGTCATGCACCAGCCTTTCCAAGTTACACCAACATCTCCTATAGGGTCTT
CCTATCAGTCTATACAAACTAGTATGTATAACGGTCCAACCTGTCTTCCTGTGAATCCTGCCTCTAGTCA
AGAATTTGACCCAGTTTTGTTTCAGCAAGATGCAGCTCTTTCTAGTTTAGTAAATCTTGGCTGTCAACCA
CTGTCACCAATACCATTTCATTCTTCAAATTCAGATGCGACAGGACATCTCTTAGCACATTCACCTCATT
CTGTGCAAACCCCACCTCATCTGCAGTCAATGGGATACCATTGTTCAAATGCAGGACAAACAGCTCTTTC
TTCTCCAGTGGCAGACCAGATCACAGGTCAGCCTTCTTCTCATTTACAGCCTATTACATATTGTCCTTCA
CACCCAGGATCTGCTACAGCAGCTTCCCCAGCAGCCTCTCATCCTCTGGCTAGTTCACCGATTTCTGGGC
CATCATCCCCTCAGCTGCAGCCTATGCCTTATCAATCTCCTAGCTCAGGAACTGCCTCATCACCATCTCC
AACTACCAGAATGCATTCTGGACAGCACTCAACTCAAGCACAAAGTACAGGCCAAGGAGGCCTTTCTGTT
CCTTCATCCTTAGTATGTCACAGTTTGTGTGACCCAGCGTCATTTCCGCCTGGTGGTGCAACTGTGAGCA
TTAAACCTGAACCTGAAGATCAAGAACCTAACTTTGCAACCATTGGTCTACAGGATATCACCTTAGATGA
TGACCAGTTTATATCTGACTTGGAACACCAGCCATCAGGTTCAACAGAGAAATGGCCCAATCACAGTGAG
TTCTCATGTCCAGTTCCTTTCTGGAGAATCTAG

Translation (1060 aa):
MQRPRRVLFSVSAQLPSRTRPGPSDLDLEPDDCASIYIFNVDPPPSTLNSSLGLPHHGLLQSHSSVLSPS
FQLQGYKNYEGTGDISESKYSPLGGPKPFECPSIQITSISPNCHQGTDAHEDDLHINDPEREYLERPSRD
HLYLPLEPSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVDSELNEAAARFTLGSPLTSPGGSPG
GCPGEESWHQQYGSGHSLSPRQSPCHSPRSSITDENWLSPRPASGPSSRPTSPCGKRRHSSAEVCYAGSL
SPHHSPVPSPGHSPRGSVTEDTWLTAPVHTGSGLSPAPFPFQYCVETDIPLKTRKTSEDQAAILPGKLEI
CSDDQGNLSPSRETSVDDGLGSQYPLKKDSSGDQFLSVPSPFTWSKPKPGHTPIFRTSSLPPLDWPLPTH
FGQCELKIEVQPKTHHRAHYETEGSRGAVKASTGGHPVVKLLGYSEKPINLQMFIGTADDRYLRPHAFYQ
VHRITGKTVATASQEIIIASTKVLEIPLLPENNMSASIDCAGILKLRNSDIELRKGETDIGRKNTRVRLV
FRVHIPQPSGKVLSLQIASIPVECSQRSAQELPHIEKYSINSCSVNGGHEMIVTGSNFLPESKIIFLEKG
QDGRPHWEAEGKIIREKCQGAHIVLEVPPYHNPAVTSAVQVHFYLCNGKRKKSQSQRFTYTPVLMKQEQR
EDTDLPSVPSLPVPHSAQAQRPSSETGHPHDRAMSAPGSLLCQVQPAYTSMVASTHLPQLQCRDEGAGKE
QHIATSSVMHQPFQVTPTSPIGSSYQSIQTSMYNGPTCLPVNPASSQEFDPVLFQQDAALSSLVNLGCQP
LSPIPFHSSNSDATGHLLAHSPHSVQTPPHLQSMGYHCSNAGQTALSSPVADQITGQPSSHLQPITYCPS
HPGSATAASPAASHPLASSPISGPSSPQLQPMPYQSPSSGTASSPSPTTRMHSGQHSTQAQSTGQGGLSV
PSSLVCHSLCDPASFPPGGATVSIKPEPEDQEPNFATIGLQDITLDDDQFISDLEHQPSGSTEKWPNHSE
FSCPVPFWRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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