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Report for CCDS21917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21917.1 Public Mus musculus 7 Hmx3 23 108 98 CCDS HistoryNCBI Gene:15373Re-query CCDS DB by CCDS ID:21917.1Re-query CCDS DB by GeneID:15373See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046093.5 ENSMUSP00000039018.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046093.5Link to Ensembl Protein Viewer:ENSMUSP00000039018.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046093Re-query CCDS DB by Protein ID:ENSMUSP00000039018
Original member Current member NCBI NM_008257.3 NP_032283.3 Accepted alive Link to Nucleotide Sequence:NM_008257.3Link to Protein Sequence:NP_032283.3Re-query CCDS DB by Nucleotide ID:NM_008257Re-query CCDS DB by Protein ID:NP_032283Link to BLAST:NP_032283.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032283.3 356 P42581 356 100% 0 0

Chromosomal Locations for CCDS 21917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131542963 131543362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131543965 131544635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCCGGAGCCCGGGCCGGACGCCTCGGGCACTGCCAGCGCGCCGCCCCCGCAGCCACCGCCCCAACCTC
CC
GCGCCCAAGGAATCCCCGTTCTCCATCAGGAACCTGCTCAACGGAGACCATCACCGGCCGCCCCCGAA
G
CCTCAGCCGCCCCCACGAACGCTCTTTGCTCCGGCCTCGGCTGCTGCCGCCGCCGCCGCCGCTGCGGCC
GCC
GCAGCCAAAGGTGCCCTGGAGGGCGCCGCGGGCTTCGCGCTCTCGCAGGTGGGCGACCTGGCTTTCC
CC
CGCTTTGAGATCCCAGCGCAGAGGTTTGCCCTGCCCGCGCACTACCTGGAGCGCTCCCCGGCCTGGTG
G
TACCCCTACACCCTGACCCCCGCCGGCGGTCACCTCCCGCGACCAGAAGCCTCGGAAAAGGCCCTCCTG
CGA
GACTCCTCCCCTGCGTCCGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACC
AC
AAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGAGAGCGACTCGGAGGAAGGCAAAAA
A
GAAGGCGAGGCGGTGCCTGGCGCGGCCGGGACGACCGTAGGGGCGACTACGGCGACACCGGGCTCAGAG
GAC
TGGAAGGCGGGCGCCGAGAGTCCCGAGAAGAAGCCGGCGTGCCGCAAAAAGAAGACGCGCACCGTCT
TC
TCGCGCAGCCAGGTCTTCCAGCTCGAGTCCACATTCGACATGAAACGCTACCTGAGCAGCTCGGAGCG
C
GCTGGCCTGGCCGCGTCGCTTCACCTCACCGAGACGCAGGTCAAGATCTGGTTCCAGAATCGCCGCAAC
AAG
TGGAAGCGACAGCTGGCGGCCGAGCTGGAGGCGGCCAACCTGAGCCACGCCGCTGCGCAGCGCATCG
TA
CGCGTGCCCATCCTCTACCACGAGAACTCTGCGGCCGAGGGGGCGGCAGCGGCTGCGGGGGCACCGGT
G
CCAGTCAGCCAGCCGCTGCTCACCTTCCCGCACCCAGTCTACTACTCGCACCCGGTGGTCTCGTCCGTG
CCC
CTACTAAGGCCGGTGTGA


Translation (356 aa):
MPEPGPDASGTASAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAA
A
AAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPE
ASEKALL
R
DSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEEGKKEGEAVPGAAGTTVGATTATPGSE
D
WKAGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRN
K
WKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSV
P
LLRPV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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