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Report for CCDS15786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15786.1 Public Mus musculus 2 Lcn8 23 108 98 CCDS HistoryNCBI Gene:78076Re-query CCDS DB by CCDS ID:15786.1Re-query CCDS DB by GeneID:78076See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038482.6 ENSMUSP00000043902.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038482.6Link to Ensembl Protein Viewer:ENSMUSP00000043902.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038482Re-query CCDS DB by Protein ID:ENSMUSP00000043902
Original member Current member NCBI NM_033145.1 NP_149157.1 Accepted alive Link to Nucleotide Sequence:NM_033145.1Link to Protein Sequence:NP_149157.1Re-query CCDS DB by Nucleotide ID:NM_033145Re-query CCDS DB by Protein ID:NP_149157Link to BLAST:NP_149157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149157.1 175 Q924P3 175 100% 0 0

Chromosomal Locations for CCDS 15786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25653140 25653232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25654161 25654291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25654745 25654815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25655115 25655219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25655299 25655388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25655482 25655507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25656103 25656114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGAAGCTAGGCTGCTGAGCAATGTCTGCGGATTCTTCCTGGTGTTCCTGCTACAAGCTGAGTCTACCA
GGGTGGAGCTTGTACCAGAGAAGATTGCAGGATTCTGGAAGGAAGTGGCTGTTGCTTCTGACCAAAAACT
GGTGCTGAAGGCTCAAAGGAGGGTAGAGGGCTTGTTCCTCACCTTCAGTGGGGGGAATGTCACTGTGAAA
GCCGTGTACAACAGCTCAGGAAGTTGTGTGACAGAAAGTTCACTGGGTTCAGAAAGAGACACTGTGGGGG
AATTTGCTTTTCCTGGTAACAGGGAGATCCACGTGCTGGACACGGACTATGAGCGCTACACCATCCTGAA
GTTGACCCTGCTCTGGCAGGGTAGAAACTTCCATGTGCTCAAGTACTTCACTCGGAGCCTTGAGAACGAG
GATGAGCCAGGCTTCTGGCTGTTCCGGGAAATGACAGCAGACCAAGGCCTTTACATGTTGGCCCGACATG
GGAGGTGTGCTGAGCTCTTGAAAGAGGGACTGGTCTGA

Translation (175 aa):
MEARLLSNVCGFFLVFLLQAESTRVELVPEKIAGFWKEVAVASDQKLVLKAQRRVEGLFLTFSGGNVTVK
AVYNSSGSCVTESSLGSERDTVGEFAFPGNREIHVLDTDYERYTILKLTLLWQGRNFHVLKYFTRSLENE
DEPGFWLFREMTADQGLYMLARHGRCAELLKEGLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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