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Report for CCDS38352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38352.1 Public Mus musculus 2 Rab22a 23 108 98 CCDS HistoryNCBI Gene:19334Re-query CCDS DB by CCDS ID:38352.1Re-query CCDS DB by GeneID:19334See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029024.9 ENSMUSP00000029024.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029024.9Link to Ensembl Protein Viewer:ENSMUSP00000029024.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029024Re-query CCDS DB by Protein ID:ENSMUSP00000029024
Original member Current member NCBI NM_024436.3 NP_077756.2 Accepted alive Link to Nucleotide Sequence:NM_024436.3Link to Protein Sequence:NP_077756.2Re-query CCDS DB by Nucleotide ID:NM_024436Re-query CCDS DB by Protein ID:NP_077756Link to BLAST:NP_077756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077756.2 194 P35285 194 100% 0 0

Chromosomal Locations for CCDS 38352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 173660106 173660141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173661432 173661511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173688147 173688228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173695110 173695181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173695259 173695365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173695890 173695999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173701022 173701119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGCGCTGAGGGAACTTAAAGTGTGCCTGCTCGGGGATACGGGTGTGGGTAAATCGAGCATCGTGTGGC
GGTTTGTGGAAGACAGTTTTGATCCGAATATCAATCCAACCATAGGGGCATCTTTTATGACCAAGACTGT
CCAGTACCAAAATGAGCTACATAAATTCCTAATCTGGGATACAGCTGGACAAGAACGATTTCGTGCATTG
GCACCAATGTACTATCGAGGGTCAGCAGCAGCCATCATCGTTTACGACATCACAAAAGAAGAGACGTTTT
CAACTCTGAAGAACTGGGTGAGAGAGCTCCGCCAGCACGGCCCCCCCAGCATTGTCGTTGCCATCGCAGG
GAACAAGTGCGATCTTACTGATGTCAGAGAAGTCATGGAGAGAGATGCTAAGGACTACGCAGATTCCATT
CATGCCATCTTTGTAGAGACCAGCGCAAAAAATGCAATAAACATAAATGAACTCTTTATAGAAATTAGTC
GAAGAATTCCATCCACTGATGCCAACCCAGCGTCTGGCGGCAAGGGCTTCAAACTCCGAAGACAGCCATC
GGAGCCAAAGCGAAGCTGCTGCTGA

Translation (194 aa):
MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRAL
APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI
HAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRRQPSEPKRSCC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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