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Report for CCDS54325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54325.1 Public Homo sapiens 19 ZNF419 24 110 108 CCDS HistoryNCBI Gene:79744Re-query CCDS DB by CCDS ID:54325.1Re-query CCDS DB by GeneID:79744See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424930.6 ENSP00000388864.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424930.6Link to Ensembl Protein Viewer:ENSP00000388864.1Re-query CCDS DB by Nucleotide ID:ENST00000424930Re-query CCDS DB by Protein ID:ENSP00000388864
Original member Current member NCBI NM_001098491.2 NP_001091961.1 Accepted alive Link to Nucleotide Sequence:NM_001098491.2Link to Protein Sequence:NP_001091961.1Re-query CCDS DB by Nucleotide ID:NM_001098491Re-query CCDS DB by Protein ID:NP_001091961Link to BLAST:NP_001091961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091961.1 511 Q96HQ0-5 511 100% 0 0

Chromosomal Locations for CCDS 54325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57487951 57487983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57490147 57490185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57491468 57491597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492113 57492211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492856 57494090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGGTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGG
AGCAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGA
CGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGGGACTTGCA
TCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTG
TGACTTCAGCCATACCGAGAGGTTGTTGGCATGGAGCCGAGGCTGAGGAGGCTCCTGAGCAGATTGCTTC
TGTAGGACTGCTCAGTTCAAACATTCAGCAACACCAGAAGCAGCACTGTGGAGAGAAACCCTTAAAAAGA
CAAGAGGGCAGGGTCCCAGTTTTGAGGAGTTGCAAAGTTCACCTATCAGAGAAGTCCTTGCAAAGCAGGG
AGGTTGGGAAGGCCCTCCTGATCAGCTCAGGTGTTCTCAAGCACCAGGTGACTCACACAGGAGAGAAGTC
ACATAGGAGCTCCAAAAGTAGGGAGGCCTTTCATGCTGGAAAAAGGCATTACAAATGCAGTGAATGTGGG
AAAGCCTTTGGTCAGAAATATTTACTTGTTCAGCACCAGAGACTACATGCTGGGAAAAAGACGTATGAAT
GCAGTGAATGTGGGAAGTTATTTAGAGATATGTCCAACCTTTTTATACACCAAATAGTTCACACTGGAGA
AAGGCCTTACGGGTGTAGTAACTGTGGAAAATCCTTTAGCCGTAATGCTCACCTCATTGAACACCAGAGA
GTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCTTTCAGGCATAATTCCACACTTG
TTCAGCATCACAAAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTGTTTAGTTT
CAACTCCAGCCTCATGAAACATCAGAGAATTCACACTGGAGAAAGACCTTATAAGTGCAGTGAATGTGGA
AAATTCTATAGCCACAAGTCCAACCTTATCAAACATTGGCGTGTTCATACTGGAGAAAGGCCTTACAAGT
GCAGCGACTGTGGGAAATTTTTTACCCAATGCTCAAGCCTCATGCAACATCAAAAAGTTCACACTGGAGA
AAAGCCTTTTAAGTGCAATGAATGTGGGAGATTCTTTAGAGAGAATTCCACCCTAGTTAGACATCAGAGG
GTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAATTTTTTAGCCAAAGCTCAACCCTCA
TGCAACATCGAAAAGTTCACATTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGAGATTGTTTAGAGA
GAATTCCAGCCTTGTTAAACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGG
AAGTTTTTTCGCCACAACTCCAGTCTTTTTAAACATCGAAGGATTCACACTGGAGAAATGCAGTGA

Translation (511 aa):
MAAAALRDPAQVPVAADLLTDHEEQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGLA
SSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEEAPEQIASVGLLSSNIQQHQKQHCGEKPLKR
QEGRVPVLRSCKVHLSEKSLQSREVGKALLISSGVLKHQVTHTGEKSHRSSKSREAFHAGKRHYKCSECG
KAFGQKYLLVQHQRLHAGKKTYECSECGKLFRDMSNLFIHQIVHTGERPYGCSNCGKSFSRNAHLIEHQR
VHTGEKPFTCSECGKAFRHNSTLVQHHKIHTGVRPYECSECGKLFSFNSSLMKHQRIHTGERPYKCSECG
KFYSHKSNLIKHWRVHTGERPYKCSDCGKFFTQCSSLMQHQKVHTGEKPFKCNECGRFFRENSTLVRHQR
VHTGAKPYECRECGKFFSQSSTLMQHRKVHIGEKPFKCNECGRLFRENSSLVKHQRVHTGAKPYECRECG
KFFRHNSSLFKHRRIHTGEMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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