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Report for CCDS27171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27171.1 Public Mus musculus 14 Cab39l 23 108 98 CCDS HistoryNCBI Gene:69008Re-query CCDS DB by CCDS ID:27171.1Re-query CCDS DB by GeneID:69008See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022553.5 ENSMUSP00000022553.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022553.5Link to Ensembl Protein Viewer:ENSMUSP00000022553.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022553Re-query CCDS DB by Protein ID:ENSMUSP00000022553
Original member Current member NCBI NM_001360591.1 NP_001347520.1 Accepted alive Link to Nucleotide Sequence:NM_001360591.1Link to Protein Sequence:NP_001347520.1Re-query CCDS DB by Nucleotide ID:NM_001360591Re-query CCDS DB by Protein ID:NP_001347520Link to BLAST:NP_001347520.1
Original member Current member NCBI NM_001360592.1 NP_001347521.1 Accepted alive Link to Nucleotide Sequence:NM_001360592.1Link to Protein Sequence:NP_001347521.1Re-query CCDS DB by Nucleotide ID:NM_001360592Re-query CCDS DB by Protein ID:NP_001347521Link to BLAST:NP_001347521.1
Original member Current member NCBI NM_001360593.1 NP_001347522.1 Accepted alive Link to Nucleotide Sequence:NM_001360593.1Link to Protein Sequence:NP_001347522.1Re-query CCDS DB by Nucleotide ID:NM_001360593Re-query CCDS DB by Protein ID:NP_001347522Link to BLAST:NP_001347522.1
Original member Current member NCBI NM_026908.4 NP_081184.3 Accepted alive Link to Nucleotide Sequence:NM_026908.4Link to Protein Sequence:NP_081184.3Re-query CCDS DB by Nucleotide ID:NM_026908Re-query CCDS DB by Protein ID:NP_081184Link to BLAST:NP_081184.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347520.1 337 Q9DB16-1 337 100% 0 0
NP_001347521.1 337 Q9DB16-1 337 100% 0 0
NP_001347522.1 337 Q9DB16-1 337 100% 0 0
NP_081184.3 337 Q9DB16-1 337 100% 0 0

Chromosomal Locations for CCDS 27171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59496834 59496944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59499544 59499708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59506265 59506383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59519566 59519734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59526756 59526815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59528842 59528907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59539062 59539205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59546986 59547165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGAAAAAAATGCCTTTGTTTAGTAAATCACACAAAAATCCAGCAGAAATTGTCAAAATTCTGAAAGACA
ACCTGGCCATTTTGGAAAAGCAAGACAAAAAGACAGACAAGGCTTCAGAAGAGGTGTCAAAATCTCTGCA
AGCAATGAAGGAAATTCTGTGTGGAACGAACGACAAGGAGCCCCCTACAGAAGCAGTGGCTCAGCTGGCG
CAGGAGCTCTACAGCAGCGGGTTGCTGGTGACACTCATAGCTGACCTGCAGCTCATAGACTTTGAGGGAA
AAAAAGATGTGACCCAGATATTCAACAACATCCTGAGAAGACAGATTGGTACACGGTGTCCTACTGTCGA
GTACATCAGTTCTCATCCTCACATCCTGTTTATGCTTCTCAAAGGCTATGAAGCCCCACAGATTGCCTTA
CGCTGTGGGATTATGCTAAGAGAGTGTATTCGACATGAGCCACTTGCCAAAATCATCCTATTTTCTAATC
AGTTCAGAGATTTCTTCAAGTATGTTGAGCTGTCCACCTTTGATATCGCTTCAGATGCCTTCGCTACTTT
TAAGGATTTGTTAACCAGACATAAAGTATTGGTAGCAGACTTCTTAGAACAAAATTATGACACTATTTTT
GAAGACTATGAGAAACTGCTGCAATCTGAGAACTATGTGACAAAGAGACAATCTTTAAAGTTGCTAGGTG
AGCTGATCCTGGACCGCCACAATTTCACCATTATGACCAAGTATATCAGCAAGCCAGAGAACCTGAAACT
GATGATGAACCTGCTTCGAGACAAAAGTCCCAACATCCAATTCGAAGCCTTCCATGTCTTTAAGGTGTTT
GTGGCCAGCCCCCACAAAACGCAGCCTATCGTGGAGATTCTGTTAAAAAATCAGCCCAAACTCATTGAGT
TTCTGAGCAGCTTTCAGAAAGAAAGGACAGACGACGAGCAGTTTGCTGACGAGAAGAACTACCTGATTAA
ACAGATTCGAGACTTGAAGAAAGCAGCCCCGTGA

Translation (337 aa):
MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLA
QELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIAL
RCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIF
EDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVF
VASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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