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Report for CCDS36277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36277.1 Public Mus musculus 11 Coil 23 108 98 CCDS HistoryNCBI Gene:12812Re-query CCDS DB by CCDS ID:36277.1Re-query CCDS DB by GeneID:12812See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036649.7 ENSMUSP00000047588.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036649.7Link to Ensembl Protein Viewer:ENSMUSP00000047588.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036649Re-query CCDS DB by Protein ID:ENSMUSP00000047588
Original member Current member NCBI NM_016706.2 NP_057915.2 Accepted alive Link to Nucleotide Sequence:NM_016706.2Link to Protein Sequence:NP_057915.2Re-query CCDS DB by Nucleotide ID:NM_016706Re-query CCDS DB by Protein ID:NP_057915Link to BLAST:NP_057915.2

Chromosomal Locations for CCDS 36277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88973949 88974202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88981069 88982167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88982289 88982375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88982603 88982650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88985017 88985086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88987979 88988067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88990668 88990742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGAGCAAGATGGCAGCCTCCGAGACGGTTAGGCTACGGCTTCAATTTGACTACCCGCCGCCGGCCACTC
CACACTGCACGGTCTTCTGGCTTCTGGTGGACCTGAACAGATGTCGAGTTGTCACGGATCTCATCAGTCT
CATCCGCCAGCGCTTCGGCTTCAGTTCCGGGGCGCTCCTGGGCCTCTATCTGGAAGGGGGGCTGCTGCCC
CCTGCCGAGAGCGCGCGCCTGGTGAGAGACAACGACAGCCTCAGGGTTAAGTTAGAAGACCAAGGACTCC
CTGAGAACCTGATAGTAAGCAATGGTGGCGACTCTAGTTTCCCATGCAGGAAAGCAAAGAAACGGGCTTT
TAAGTTGATGGAGGATGAGGAAACAGATCAGGGATACAAGTCTTTGAAGAAGCACTGCAAGAGGCAGGAG
GACAGCGGCCAGAATGAGAAGGCCTCGGACCTGGAAACTAAACTCCTCCCAGATGAGACGGGGCGGACAA
AGAGCAAGAAAAAGAGCAAAGTGACAGGCAGCCCAGCCGAAGAGGATGAGGAAGAGACCAAAAAGAAGTC
TTCAAAAAGAAAGGAGAAGTGTGAACCGAAGAAGCAGACCAGGGCCTCCAAGTCTTCCAAACAACAGACG
CCTAAAGAGGGGGCCTCACAGAACTGCAGCTTCCCCAGGGCCTCCCCCAGAAGCCTCGGTAAAGCCCGAA
GGAGAAGCAGCACGGGGCTAAAAGGTAGCTCAGGCCACCTGTCAGAGTCTGAGTCCTGCCCAGAGTCAGT
CAGCGATGGCCACTGCAGTGTCATGATGCAGGAGGTCACCTTTTCAGAGAAACTGTCAGCTGAGCTGTTG
AAAGATGCACCTGCTACCAAGACTGCAGCTGCCAACAGGCAGGCCTCAAAGCCTGGCTTTACCTTCAGCT
CCGGCAAGGGCAAGGCCTCCAGAACCTCGTCATCCAGTTCAGACTCCAGTTCAGAGTCGGAAGACCAGTT
CCTGGTGTCCAAGAACATGCTCGAGGGCGCATCTGCTGGCTTCTTAAAGCCAACTGGCCTCTTTGCAGGG
CAAGGGGGTTCTGGTCCAGGGCTGTCATTGGAGACTCCGGGTATTATGGGATGGAAGTCTTCTGACTCAA
ACCGGGGCAGACAAGCTCCTGGTCCTCCCAGTACGCCTGTCCCCACCAGTTTGGGAAGAGGATGGGGGCG
AGGAGAGGACTTGTTGTTTGGGAAGGGACTGAGGGGCCGGGGTGTCCGGGGCCGAGGGCGAGGGCGCGGG
CAAGCGGTCTCCTGTGTCTTTAATAGAAGCTCTGAGAGTCAGAAGCAGAGACAGTTAAATGATATTCTAA
CAAACTCATCTGTGGTGATCCAGAATCCAGTAGAGCCCCCCAAGAAGGACTATAGTCTATTACCACTGTT
GGCAGCTGCCCCTCAAGTTGGAGAAAAGATTGCATTTAAGCTTTTGGAACTCACATCCGACTACTCTCCT
GATGTCTCTGACTACAAGGAAGGAAAAATATTAAGTCACGATCCAGAGACCCAGCAAGTGGACATAGAGG
TCCTCTCCTCGCTACCGGCTTTGAAAGAACCTGGGAAGTTTGATTTGGTCTATCACAATGAAAATGGAAC
CGAGGTGGTGGAATACGCTGTGACTCAGGAGAAGAGGATCACCGTGCTCTGGAGAGAGTTGATCGATCCG
AGGCTGATCATTGACTCTTCAGGTAGCATCTCGAGTACATAA

Translation (573 aa):
MSKMAASETVRLRLQFDYPPPATPHCTVFWLLVDLNRCRVVTDLISLIRQRFGFSSGALLGLYLEGGLLP
PAESARLVRDNDSLRVKLEDQGLPENLIVSNGGDSSFPCRKAKKRAFKLMEDEETDQGYKSLKKHCKRQE
DSGQNEKASDLETKLLPDETGRTKSKKKSKVTGSPAEEDEEETKKKSSKRKEKCEPKKQTRASKSSKQQT
PKEGASQNCSFPRASPRSLGKARRRSSTGLKGSSGHLSESESCPESVSDGHCSVMMQEVTFSEKLSAELL
KDAPATKTAAANRQASKPGFTFSSGKGKASRTSSSSSDSSSESEDQFLVSKNMLEGASAGFLKPTGLFAG
QGGSGPGLSLETPGIMGWKSSDSNRGRQAPGPPSTPVPTSLGRGWGRGEDLLFGKGLRGRGVRGRGRGRG
QAVSCVFNRSSESQKQRQLNDILTNSSVVIQNPVEPPKKDYSLLPLLAAAPQVGEKIAFKLLELTSDYSP
DVSDYKEGKILSHDPETQQVDIEVLSSLPALKEPGKFDLVYHNENGTEVVEYAVTQEKRITVLWRELIDP
RLIIDSSGSISST


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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