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Report for CCDS38561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38561.1 Public Mus musculus 3 Chd1l 23 108 98 CCDS HistoryNCBI Gene:68058Re-query CCDS DB by CCDS ID:38561.1Re-query CCDS DB by GeneID:68058See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029730.4 ENSMUSP00000029730.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029730.4Link to Ensembl Protein Viewer:ENSMUSP00000029730.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029730Re-query CCDS DB by Protein ID:ENSMUSP00000029730
Original member NCBI NM_026539.2 NP_080815.1 Updated not alive Link to Nucleotide Sequence:NM_026539.2Link to Protein Sequence:NP_080815.1Re-query CCDS DB by Nucleotide ID:NM_026539Re-query CCDS DB by Protein ID:NP_080815
Current member NCBI NM_026539.3 NP_080815.1 Accepted alive Link to Nucleotide Sequence:NM_026539.3Link to Protein Sequence:NP_080815.1Re-query CCDS DB by Nucleotide ID:NM_026539Re-query CCDS DB by Protein ID:NP_080815Link to BLAST:NP_080815.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080815.1 900 Q9CXF7-1 900 100% 0 0

Chromosomal Locations for CCDS 38561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97561015 97561087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97562579 97562687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97563457 97563571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97566759 97566829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97569101 97569199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97570202 97570404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97570904 97571067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97572561 97572709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97580979 97581177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97582717 97582870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97583808 97583922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97587111 97587221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97588240 97588313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97589906 97590002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97590554 97590646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97591205 97591360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97594008 97594170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97597692 97597773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97602022 97602053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97603009 97603123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97603660 97603766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97605098 97605210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97610063 97610171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGCGAGCGGCTTGCCGCGCTTCCTGCAGGCGCTGCCGGCCGAACACGGGCCGGAGCCGCTTCGGACGC
GG
GTGCAGGAACCGGACTTACAGCAGTGGGGCTTGACTGGGATTCGTCTACGTTCTTACCAACTGGAAGG
A
GTCAATTGGCTAGTCCAGTGCTTCCATTGCCAGAATGGCTGCATCCTGGGAGATGAGATGGGCTTGGGG
AAG
ACCTGCCAGACTATCGCTCTCCTCATTTACTTGGTGGGGAGACTGAATGATGAAGGGCCGTTTCTGG
TT
CTCTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAGATTTGCTCCAGGTCTTTCCTG
T
GTGACATACACAGGTGACAAGGAGGAGAGAGCCCGCCTTCAGCAGGACCTAAGACAGGAGTCAGGTTTT
CAC
GTGCTGCTGACGACATACGAGATTTGCTTGAAAGATGCCTCATTTCTAAAATCCTTCTCTTGGAGCG
TT
CTTGCTGTGGATGAAGCTCACAGATTGAAAAACCAGAGCTCCCTGCTGCACAGGACACTTTCAGAGTT
C
TCAGCGGTCTTCCGTCTCCTGCTCACCGGAACGCCCATCCAGAACAGCCTCCGGGAGCTCTACTCCCTC
CTC
TGTGTCGTGGAGCCTGACCTCTTCTGCAGAGAACAGGTGGAAGATTTCGTTCAGCGTTACCAGGACA
TC
GAGAAAGAGTCCAAATCAGCAAGCGAGCTGCACAGGCTCTTGCAGCCATTTCTCCTGAGGCGTGTGAA
A
GCTCAGGTAGCCACAGAGCTCCCCAAGAAGACAGAGGTGGTGGTGTACCACGGCATGTCCGCTCTGCAG
AAA
AAGTACTACAAGGCCATCCTGATGAAAGACCTGGATGCATTTGAGAACGAGACAGCCAAGAAAGTCA
AA
CTCCAGAACATCCTGACGCAGCTTCGGAAGTGTGTGGACCACCCGTATCTGTTCGATGGTGTGGAACC
A
GAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAAGCTTCACCTGCTGGACAGGCTGCTG
GCG
TTTCTGTATTCTGGGGGCCATCGGGTTTTACTTTTCTCCCAGATGACACACATGCTGGATATTCTGC
AG
GACTATATGGACTACAGAGGCTACAGCTACGAGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACA
C
CTGGCCATTAAGAACTTTGGAAACCAGCCCATTTTTGTTTTTCTCCTGAGCACCCGGGCAGGTGGAGTG
GGC
ATGAACTTAACAGCGGCAGACACCGTCATTTTTGTCGACAGCGACTTCAACCCTCAGAATGACTTGC
AG
GCGGCCGCCAGAGCTCACCGAATTGGCCAGAACAAGTCTGTTAAAGTCATCCGGCTGATCGGCCGCGA
C
ACCGTGGAAGAAATCGTGTATAGGAAGGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGA
GGT
CATTTCACACCAGGAGCCCAGAAACCTTCAGCCGAGGCCGACTTCCAGTTAAGTGAGATTCTCAAAT
TC
GGCTTGGATAAACTGCTGTCCTCTGAGGGGAGCTCCATGGAGGATATAGACCTGAAGTCCATCCTGGG
A
GAAACCAAAGATGGCCAGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGCAGCAGGAGGAGGAAGCCTA
GAA
CCAGAGGAAGGAAGTGAATTGGAATCCAGGTCTTATGAAAACCACATGTACTTGTTTGAAGGTAGAG
AC
TATTCTAAGGAGCCCAGTAAGGAAGACAGAAAGTCATTTGAGCAGCTGGTGAATCTTCAGAAAACCCT
T
CTAGAGAAGACAAGCCATGGGGGCCGGACCCTCCGGAACAAAGGCAGCGTTCTTATCCCAGGCCTTGCA
GAA
GGGCCCATCAAAAGGAAGAAGATCCTTAGCCCAGAGGAGCTGGAGGACAGACGGAAGAAAAGACAGG
AA
GCAGCGGCCAAGAGGAAGAGACTGATGGAGGAGAAGAGGAAGGAGAAGGAGGAGGCTGAACACAGGAA
G
AAGATGGCCTGGTGGGAATCCAACGGTTACCAGTCCTTCTGCCTGTCCTCGGAGGACAGCGAGCTTGAG
GAC
CTGGAGGGCGGAGATGAGTCTTCTGCCGAGCTGGCTTATGAAGATCTAGACTCAACCTCCATTAACT
AT
GTTAGTGGCGACGTCACCCACCCCCAGGCTGGCGAAGAAGATGCTGTCATTGTGCACTGTGTAGATGA
T
TCTGGCCGCTGGGGCAGAGGTGGCTTATTCACAGCTCTGGAAGTACGATCAGCTGAACCAAGAAAAATA
TAC
GAGCTGGCTGGGAAAATGGAAGACCTGAGTTTGGGTGATGTCCTTCTATTTCCTATCGACGATAAAG
AG
TCACGAGACAAGGGGCAAGATCTGTTGGCCTTGGTTGTGGCTCAGCACCGTGATCGCACCAATGTCCT
G
TCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTAGCAGCAAAGAAAAAGAAA
G
CA
AGCGTTCATCTTCCACGAATTGGACATGCTACAAAGGGTTTTAACTGGTATGGTACCGAACGACTTA
TC
CGGAAACATTTGGCTACACGAGGCATCCCAACTTACATATACTACTTTCCCAGAAGTAAGGCCCGCCA
T
TCACAGCCTGCATCCTCCTCCTCAGCACCACTGGTTCCCTAG


Translation (900 aa):
MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLG
K
TCQ
TIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGF
H
VLLTTYE
ICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSL
L
CVVEPDLFCREQVEDFVQRYQDIEKESKS
ASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQ
K
KYYKAILMKDL
DAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLL
A
FLYS
GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGV
G
MNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQN
KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG
G
HFTPGAQKPSAEADFQ
LSEILKFGLDKLLSSEGSSMEDIDLKSILGETKDGQWTPDALPAAAAAGGGSL
E
PEEGSELESRSY
ENHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRTLRNKGSVLIPGLA
E
GPIKRKKILSPEELEDRRKKRQEAAAKRKRLMEEKRKEKEEAEHRK
KMAWWESNGYQSFCLSSEDSELE
D
LEGGDESSAELAYEDLDSTSINYVSGDVTHPQAGEEDAVIVHCV
DDSGRWGRGGLFTALEVRSAEPRKI
Y
ELAGKME
DLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKK
A
SVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRSKARHSQPASSSSAPLVP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser