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Report for CCDS16970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16970.1 Public Mus musculus 2 Rab5if 23 108 98 CCDS HistoryNCBI Gene:67388Re-query CCDS DB by CCDS ID:16970.1Re-query CCDS DB by GeneID:67388See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029165.3 ENSMUSP00000029165.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029165.3Link to Ensembl Protein Viewer:ENSMUSP00000029165.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029165Re-query CCDS DB by Protein ID:ENSMUSP00000029165
Original member Current member NCBI NM_026124.3 NP_080400.1 Accepted alive Link to Nucleotide Sequence:NM_026124.3Link to Protein Sequence:NP_080400.1Re-query CCDS DB by Nucleotide ID:NM_026124Re-query CCDS DB by Protein ID:NP_080400Link to BLAST:NP_080400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080400.1 129 Q9CQT9 129 100% 0 0

Chromosomal Locations for CCDS 16970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156863304 156863417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156865257 156865360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156872338 156872467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156873043 156873084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGAGCGGCGGGCGGCGGAAGGAGGAGCCGCCTCAGCCGCAGCTGGCCAACGGGGCCCTCAAGGTGTCCG
TGTGGAGCAAGGTGCTGCGGAGCGACGCGGCCTGGGACGACAAGGATGAATTTTTAGATGTGATCTACTG
GTTCCGACAGATCATCGCTCTGGTTTTGGGTGTCATTTGGGGCGTTTTGCCCTTGCGAGGCTTCTTGGGA
ATAGCAGGATTCTGCCTGATCAATGCAGGAGTTCTGTATCTCTACTTCAGTAACTACCTACAAATCGACG
AGGAAGAATATGGGGGCACGTGGGAGCTCACCAAAGAAGGCTTTATGACATCATTTGCCTTGTTCATGGT
CATTTGGATCATCTTTTACACTGCCATCCACTATGACTGA

Translation (129 aa):
MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLG
IAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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