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Report for CCDS24158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24158.1 Public Mus musculus 10 Ccdc59 23 108 98 CCDS HistoryNCBI Gene:52713Re-query CCDS DB by CCDS ID:24158.1Re-query CCDS DB by GeneID:52713See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020049.8 ENSMUSP00000020049.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020049.8Link to Ensembl Protein Viewer:ENSMUSP00000020049.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020049Re-query CCDS DB by Protein ID:ENSMUSP00000020049
Original member Current member NCBI NM_025602.3 NP_079878.1 Accepted alive Link to Nucleotide Sequence:NM_025602.3Link to Protein Sequence:NP_079878.1Re-query CCDS DB by Nucleotide ID:NM_025602Re-query CCDS DB by Protein ID:NP_079878Link to BLAST:NP_079878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079878.1 240 Q8R2N0-1 240 100% 0 0

Chromosomal Locations for CCDS 24158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 105841502 105841655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105842542 105842848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105845350 105845449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105847017 105847178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCGCCTTCGCGGCCGTCTTCCAAGTGGCGGACCGGAGGGTTTGCGGCGCGTGGGGAAGGGATCTCTC
AGGTCAGATTCGGAAACCAGAATGGGAAGCGCAGGACTTGGCGGCCGAACCCCCAGCAAGCCTTCCGGGG
GAGCGTGCGCAAGGGACAAGGTTTTGCATTTCGGAGAAAACTGAAGATCCAGCAAAATTACAAGAAATTG
CTGTGGAAGGTGAAGGAGGCACCAGCGTCACAGGAGTCCCAGTTCACAGATCGTTACCCAGAGCACCTGA
AACACCTCTATCTGGCCGAAGAGGAAAGACTCAGAAAACAGCAAAGAAAGGCTGGCCTGGCTTTGTCAGA
AGAACAGGTTGACCGGCCTTTGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCA
GGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTTTCCAAAGAATAAGAAAA
AGAAAACTTCAAACCAGAAGGCACAAGAAGAGTATGAACGAGTACAAGCGAAGCGTGCTGCTAAGAAATT
TGAATTTGAAATGAGAAAGCAAGAGAGAGAAGAGGCTCAAAGGCTCTACAAAAAGAAAAAAATGGAAGCT
TTCAAAATACTGAGCAAAAAGACTAAAAAGGGCCAGCCTAACCTGAATTTACAGATGGAGTATCTTCTGC
AGAAAATACAAGAAAACAGTTAA

Translation (240 aa):
MAPSRPSSKWRTGGFAARGEGISQVRFGNQNGKRRTWRPNPQQAFRGSVRKGQGFAFRRKLKIQQNYKKL
LWKVKEAPASQESQFTDRYPEHLKHLYLAEEERLRKQQRKAGLALSEEQVDRPLPEEEGSTEQTSSEEPP
GGHQPQPEELNTGSSVTFPKNKKKKTSNQKAQEEYERVQAKRAAKKFEFEMRKQEREEAQRLYKKKKMEA
FKILSKKTKKGQPNLNLQMEYLLQKIQENS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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