NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27717.1 Public Mus musculus 15 Fam118a 23 108 98 CCDS HistoryNCBI Gene:73225Re-query CCDS DB by CCDS ID:27717.1Re-query CCDS DB by GeneID:73225See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023069.8 ENSMUSP00000023069.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023069.8Link to Ensembl Protein Viewer:ENSMUSP00000023069.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023069Re-query CCDS DB by Protein ID:ENSMUSP00000023069
Original member Current member EBI ENSMUST00000229203.1 ENSMUSP00000154985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229203.1Link to Ensembl Protein Viewer:ENSMUSP00000154985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229203Re-query CCDS DB by Protein ID:ENSMUSP00000154985
Original member Current member NCBI NM_001356616.1 NP_001343545.1 Accepted alive Link to Nucleotide Sequence:NM_001356616.1Link to Protein Sequence:NP_001343545.1Re-query CCDS DB by Nucleotide ID:NM_001356616Re-query CCDS DB by Protein ID:NP_001343545Link to BLAST:NP_001343545.1
Original member Current member NCBI NM_133750.4 NP_598511.1 Accepted alive Link to Nucleotide Sequence:NM_133750.4Link to Protein Sequence:NP_598511.1Re-query CCDS DB by Nucleotide ID:NM_133750Re-query CCDS DB by Protein ID:NP_598511Link to BLAST:NP_598511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343545.1 357 Q91YN1-1 357 100% 0 0
NP_598511.1 357 Q91YN1-1 357 100% 0 0

Chromosomal Locations for CCDS 27717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 85044789 85044835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85045620 85045872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85048359 85048580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85050694 85050822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85053571 85053856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85055654 85055686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85058742 85058825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85061532 85061551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGAGTCAGTGGAAAAGACCACGAACAGAAGTGAGCAGAAATGCAGAAAGTTTTTAAAGAGCCTCATTA
GAAAGCAACCCCAGGACCTGCTCTTGGTCATTGGGACTGGCGTGAGCGCAGCTGTGGCCCCAGGCATCCG
AGCGCTCTGCTCTTGGAGGAGCTGCATTGAGGCGGTCATCGAGGCTGCGGAGCAGCTGGAGGTTCTGCAC
CCTGGCGACGTTGCTGAGTTCCGGAGGAAGGTGATGAAGGATCGGGACCTGCTGGTTGTGGCCCATGATC
TGATCCGGAAGATGTCACCTCGCACAGGCGACACCAAGCCCAACTTCTTCCAGGATTGCCTGATGGAGGT
GTTTGACAGCTTGGAGCAGCACATTCAGAACCCGGTGGTGCTGCGGTCCATCCTCAGCCTGATGGACAGG
GGCACCATGGTGCTGACCACCAACTACGACAACCTGCTGGAGATCTTCGGGCAGCAGCAGAGCAAGCCCA
TGGAGTCCTTGGACTTGAAGGATAAGACGAAGGTTCTTCAGTGGGCAAGAGGCCATATTAAGTATGGAGT
TCTTCATATTCATGGTTTGTACACGGACCCCTGTGGGATGGTGCTGGATCCATCGGGCTATAAAGATGTC
ACTCAAGATCCGGAAGTCATGGAAGTCCTGCAAAATCTCTACCGAACCAAGTCATTCCTGTTCGTGGGCT
GTGGCGAGACACTTCGGGACCAGATATTCCAGGCGCTCTTCTTGTACTCCGTGCCAAATAAGGTGGACTT
GGAGCACTACATGGTAGTGCTCAAGGAAAACGAAGACCATTTCTTTAAGCATCAGGCAGATATGCTTTTG
CATGGAATTAAAGTGGTGTCCTACGGGGACTGTTTTGACCTTTTCCCGGGATATGTGCAAGACCTTGCCA
CTCAGATCTGCAAGCAGCGAAGTCCAGATGCTGAGCGAGTGGACAGCACCACCTTACTGGGTAATGCATG
TCAGGACTGTGCAAAGAGGAAGTTGGAAGAGAATGGAATTGAAGTCACAAAAAAAGTTAGACAGTCAGAT
ACTGATGATGCTGGAGGGTCTTGA

Translation (357 aa):
MESVEKTTNRSEQKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLH
PGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLRSILSLMDR
GTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDV
TQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLL
HGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSD
TDDAGGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH