NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38746.1 Public Mus musculus 4 Clta 23 108 98 CCDS HistoryNCBI Gene:12757Re-query CCDS DB by CCDS ID:38746.1Re-query CCDS DB by GeneID:12757See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107851.9 ENSMUSP00000103483.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107851.9Link to Ensembl Protein Viewer:ENSMUSP00000103483.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107851Re-query CCDS DB by Protein ID:ENSMUSP00000103483
Original member Current member NCBI NM_001080385.2 NP_001073854.1 Accepted alive Link to Nucleotide Sequence:NM_001080385.2Link to Protein Sequence:NP_001073854.1Re-query CCDS DB by Nucleotide ID:NM_001080385Re-query CCDS DB by Protein ID:NP_001073854Link to BLAST:NP_001073854.1

Chromosomal Locations for CCDS 38746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44012792 44013008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44018813 44018850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44019874 44019991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44025449 44025560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44030215 44030268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44031400 44031435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44032401 44032572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCCGAGTTGGATCCATTCGGCGCTCCCGCCGGTGCGCCCGGTGGCCCCGCTCTAGGAAACGGGGTGG
CGGGCGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAAGAGAGTGAGATTGCGGGCATCGA
GAACGATGAGGCCTTCGCCATCCTGGACGGCGGCGCCCCCGGGCCGCAGCCACACGGCGAGCCGCCGGGA
GGTCCGGATGCTGTTGACGGAGTGATGAATGGTGAATACTACCAGGAGAGCAATGGTCCAACAGACAGTT
ACGCAGCCATTTCAGAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAGTGGAGAGAAGAGCA
GACAGAGCGCCTGGAAGCCCTCGATGCCAATTCTCGGAAGCAAGAAGCGGAGTGGAAAGAAAAGGCGATA
AAGGAGCTGGAAGAGTGGTATGCGAGGCAGGACGAGCAGCTACAGAAGACAAAGGCAAACAACAGGGTGG
CAGACGAAGCTTTCTACAAACAACCCTTCGCTGACCTGATTGGTTATGTCACAAACATAAACCATCCTTG
CTACAGCCTAGAACAGGCAGCAGAAGAAGCCTTTGTAAACGACATTGACGAGTCATCCCCAGGCACTGAG
TGGGAGCGGGTGGCCCGCCTGTGTGACTTTAACCCCAAGTCCAGCAAACAGGCCAAAGATGTCTCTCGCA
TGCGCTCAGTCCTCATCTCCCTGAAGCAGGCCCCCCTGGTGCACTGA

Translation (248 aa):
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG
GPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI
KELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTE
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH