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Report for CCDS35792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35792.1 Public Mus musculus 1 Ifi204 23 108 98 CCDS HistoryNCBI Gene:15951Re-query CCDS DB by CCDS ID:35792.1Re-query CCDS DB by GeneID:15951See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111214.3 ENSMUSP00000106845.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111214.3Link to Ensembl Protein Viewer:ENSMUSP00000106845.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111214Re-query CCDS DB by Protein ID:ENSMUSP00000106845
Original member Current member NCBI NM_008329.2 NP_032355.2 Accepted alive Link to Nucleotide Sequence:NM_008329.2Link to Protein Sequence:NP_032355.2Re-query CCDS DB by Nucleotide ID:NM_008329Re-query CCDS DB by Protein ID:NP_032355Link to BLAST:NP_032355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032355.2 619 P0DOV2 619 100% 0 0

Chromosomal Locations for CCDS 35792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173747600 173747620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173749195 173749383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173751628 173752044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173752710 173752898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173755607 173756029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173759469 173759627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173760130 173760326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173761599 173761863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGTGAATGAATACAAGAGAATTGTTCTGCTGAGAGGACTTGAATGTATCAATAAGCATTATTTTAGCT
TATTTAAGTCATTGCTGGCCAGAGATTTAAATCTGGAAAGAGACAACCAAGAGCAATACACCACGATTCA
GATTGCTAACATGATGGAAGAGAAATTTCCAGCTGATTCTGGATTGGGCAAACTGATTGCGTTTTGTGAA
GAAGTACCAGCTCTTAGAAAACGAGCTGAAATTCTTAAAAAAGAGAGATCAGAAGTAACAGGAGAAACAT
CACTGGAAAAAAATGGTCAAGAAGCAGGTCCTGCAACACCTACATCAACTACAAGCCACATGTTAGCATC
TGAAAGAGGCGAGACTTCTGCAACCCAGGAAGAGACTTCCACAGCTCAGGCGGGGACTTCCACAGCTCAG
GCGAGGACTTCCACAGCTCAGGCGGGGACTTCTACAGCCCAGAAAAGAAAAATTATGAGAGAAGAAGAGA
CTGGAGTGAAAAAGAGCAAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAG
GTGCCAGTCACCAATACTCCACAGCTCATCTTCAGCTTCATCTAACATTCCTTCGGCTAAGAACCAAAAA
TCACAACCCCAGAATCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGC
TCACTGCAACAGACCCATTTGAATATGAATCACCAGAACATGAAGTAAAGAACATGCTTCATGCTACAGT
GGCTACAGTGAGCCAGTATTTCCATGTGAAAGTTTTCAACATCAACTTGAAAGAAAAGTTCACAAAAAAG
AATTTTATCATCATATCCAATTACTTTGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGT
TAGAGGCTGCTCCTGACCAAATGATTGAAGTGCCCAACAGTATTATCAGAAATGCAAATGCCAGCCCTAA
GATCTGTGATATTCAAAAGGGTACTTCTGGAGCAGTGTTCTATGGAGTGTTTACATTACACAAGAAAACA
GTGAACCGAAAGAACACAATCTATGAAATAAAAGATGGTTCAGGAAGCATAGAAGTGGTGGGGAGTGGAA
AATGGCACAACATCAACTGCAAGGAAGGAGATAAACTCCACCTCTTCTGCTTTCACCTGAAAACAATTGA
CAGGCAACCAAAGTTAGTGTGTGGAGAACACAGTTTCATCAAGATATCAAAGAGAGGAAATGTACCAAAG
GAGCCTGCTAAGGAAGAAGATCACCATCATGGTCCCAAACAAGTGATGGTGCTGAAAGTAACAGAACCAT
TTACATATGACCTGAAAGAGGATAAAAGAATGTTTCATGCTACCGTGGCTACTGAAACTGAGTTCTTCAG
AGTGAAGGTTTTTGACACGGCTCTAAAGAGCAAGTTCATCCCAAGAAATATCATTGCCATATCAGATTAT
TTTGGGTGCAATGGGTTTCTGGAGATATACAGAGCTTCCTGTGTCTCTGATGTGAACGTTAATCCAACAA
TGGTTATCTCAAATACACTGAGACAAAGAGCTAATGCAACTCCTAAAATTTCTTATCTTTTCTCACAAGC
AAGGGGGACATTTGTGAGTGGAGAGTACTTAGTAAATAAGAAAACGGAGAGGAATAAATTCATTTACTAT
GGAATTGGAGATGATACAGGGAAAATGGAAGTGGTGGTTTATGGAAGACTCACCAATGTCAGGTGTGAAC
CAGGCAGTAAACTAAGACTTGTCTGCTTTGAATTGACTTCCACTGAAGATGGGTGGCAGCTGAGGTCTGT
AAGGCACAGTTACATGCAGGTCATCAATGCTAGAAAGTGA

Translation (619 aa):
MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIAFCE
EVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQ
ARTSTAQAGTSTAQKRKIMREEETGVKKSKAAKEPDQPPCCEEPTARCQSPILHSSSSASSNIPSAKNQK
SQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMLHATVATVSQYFHVKVFNINLKEKFTKK
NFIIISNYFESKGILEINETSSVLEAAPDQMIEVPNSIIRNANASPKICDIQKGTSGAVFYGVFTLHKKT
VNRKNTIYEIKDGSGSIEVVGSGKWHNINCKEGDKLHLFCFHLKTIDRQPKLVCGEHSFIKISKRGNVPK
EPAKEEDHHHGPKQVMVLKVTEPFTYDLKEDKRMFHATVATETEFFRVKVFDTALKSKFIPRNIIAISDY
FGCNGFLEIYRASCVSDVNVNPTMVISNTLRQRANATPKISYLFSQARGTFVSGEYLVNKKTERNKFIYY
GIGDDTGKMEVVVYGRLTNVRCEPGSKLRLVCFELTSTEDGWQLRSVRHSYMQVINARK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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