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Report for CCDS18622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18622.1 Public Mus musculus 4 Rragc 23 108 98 CCDS HistoryNCBI Gene:54170Re-query CCDS DB by CCDS ID:18622.1Re-query CCDS DB by GeneID:54170See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030399.6 ENSMUSP00000030399.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030399.6Link to Ensembl Protein Viewer:ENSMUSP00000030399.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030399Re-query CCDS DB by Protein ID:ENSMUSP00000030399
Original member Current member NCBI NM_017475.2 NP_059503.2 Accepted alive Link to Nucleotide Sequence:NM_017475.2Link to Protein Sequence:NP_059503.2Re-query CCDS DB by Nucleotide ID:NM_017475Re-query CCDS DB by Protein ID:NP_059503Link to BLAST:NP_059503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059503.2 398 Q99K70-1 398 100% 0 0

Chromosomal Locations for CCDS 18622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123917534 123917767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123919849 123920052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123920951 123921150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123923960 123924074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123924747 123924889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123929832 123929980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123935538 123935689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGTCCCTGCAGTACGGGGCGGAGGAGACGCCCCTGGCCGGCAGTTACGGCGCAGCCGACTCGTTCCCCA
AGGACTTCGGCTACGGCGTGGAGGAGGAGGAAGAGGAGGCAGCGGCGGGTGGCGGCGGAGGCGCGGGGGC
CGGCGGCGGCTGCGGCCCGGGCGGCGCTGACAGCTCCAAGCCGAGGATCCTGCTTATGGGGCTCCGGCGC
AGCGGCAAATCCTCCATCCAGAAGGTGGTGTTTCATAAGATGTCACCCAATGAGACTCTCTTTTTGGAAA
GTACCAACAAGATTTATAAAGATGACATTTCCAACAGCTCCTTTGTGAACTTCCAGATTTGGGATTTTCC
TGGGCAGATGGACTTCTTTGATCCAACCTTTGACTACGAAATGATCTTCAGGGGCACAGGAGCATTGATA
TATGTCATTGATGCACAGGACGACTACATGGAGGCTTTAACCCGACTTCACATCACTGTTTCTAAGGCCT
ACAAAGTTAACCCAGACATGAATTTTGAGGTTTTTATTCACAAAGTTGATGGACTGTCTGATGATCACAA
AATAGAAACACAGAGGGACATTCATCAAAGGGCCAATGATGACCTTGCAGATGCTGGGCTAGAAAAGCTC
CATCTTAGCTTTTATTTGACTAGCATCTATGACCATTCAATATTTGAAGCCTTCAGTAAGGTGGTACAGA
AACTCATTCCACAACTGCCCACTTTGGAAAACCTATTAAATATCTTTATATCAAATTCAGGTATTGAAAA
AGCTTTTCTCTTTGATGTTGTCAGCAAAATCTACATTGCAACAGACAGCTCCCCTGTGGATATGCAGTCT
TATGAACTTTGCTGTGACATGATTGATGTTGTAATTGATGTGTCTTGTATATATGGATTAAAGGAAGATG
GAAGTGGAAGTGCTTATGACAAAGAATCGATGGCCATTATCAAGCTGAATAATACAACTGTCCTTTATTT
AAAGGAAGTCACTAAATTTTTGGCACTGGTTTGCATTCTTAGGGAAGAGAGCTTTGAACGAAAAGGGTTG
ATAGACTACAACTTCCACTGTTTCCGAAAAGCTATCCATGAGGTGTTTGAGGTGGGTGTGACTTCTCACA
GAAGCTGCAGTCATCAGACCAGTGCTCCAAGTCTGAAAGCCTTGGCACATAACGGCACGCCTCGGAATGC
CATCTAG

Translation (398 aa):
MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAGGGGGAGAGGGCGPGGADSSKPRILLMGLRR
SGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALI
YVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL
HLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQS
YELCCDMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGL
IDYNFHCFRKAIHEVFEVGVTSHRSCSHQTSAPSLKALAHNGTPRNAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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