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Report for CCDS42283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42283.1 Public Homo sapiens 17 LGALS9B 24 110 108 CCDS HistoryNCBI Gene:284194Re-query CCDS DB by CCDS ID:42283.1Re-query CCDS DB by GeneID:284194See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 42283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324290.5 ENSP00000315564.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324290.5Link to Ensembl Protein Viewer:ENSP00000315564.5Re-query CCDS DB by Nucleotide ID:ENST00000324290Re-query CCDS DB by Protein ID:ENSP00000315564
Original member Current member NCBI NM_001042685.3 NP_001036150.1 Accepted alive Link to Nucleotide Sequence:NM_001042685.3Link to Protein Sequence:NP_001036150.1Re-query CCDS DB by Nucleotide ID:NM_001042685Re-query CCDS DB by Protein ID:NP_001036150Link to BLAST:NP_001036150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036150.1 355 Q3B8N2-2 355 100% 0 0

Chromosomal Locations for CCDS 42283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20449973 20450119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20451481 20451643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20451795 20451883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20452351 20452392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20453017 20453067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20453572 20453607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20455303 20455398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20456561 20456671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20458183 20458384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20460352 20460443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20467432 20467470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCCTTCAGCGGTTCCCAGGCTCCCTATCTGAGCCCAGCCGTCCCCTTTTCTGGGACTATCCAAGGGG
GTCTCCAGGACGGATTTCAGATCACTGTCAATGGGGCCGTTCTCAGCTCCAGTGGAACCAGGTTTGCTGT
GGACTTTCAGACGGGCTTCAGTGGAAACGACATTGCCTTCCACTTCAACCCTCGGTTTGAAGACGGAGGG
TATGTGGTGTGCAACACGAGGCAGAAAGGAAGATGGGGGCCCGAGGAGAGGAAGATGCACATGCCCTTCC
AGAAGGGGATGCCCTTTGACCTCTGCTTCCTGGTGCAGAGCTCAGATTTCAAGGTGATGGTGAACGGGAG
CCTCTTCGTGCAGTACTTCCACCGCGTGCCCTTCCACCGTGTGGACACCATCTCCGTCAATGGCTCTGTG
CAGCTGTCCTACATCAGCTTCCAGAATCCCCGCACAGTCCCCGTTCAGCCTGCCTTCTCCACGGTGCCGT
TCTCCCAGCCTGTCTGTTTCCCACCCAGGCCCAGGGGGCGCAGACAAAAACCTCCCAGCGTGCGGCCTGC
CAACCCAGCTCCCATTACCCAGACAGTCATCCACACGGTGCAGAGCGCCTCTGGACAGATGTTCTCTACT
CCCGCCATCCCACCTATGATGTACCCCCACCCTGCCTATCCGATGCCTTTCATCACCACCATTCCGGGAG
GGCTGTACCCATCCAAGTCCATCATCCTGTCAGGCACTGTCCTGCCCAGTGCTCAGAGGTTCCACATCAA
CCTGTGCTCTGGGAGCCACATCGCCTTCCACATGAACCCCCGTTTTGATGAGAATGCTGTGGTCCGTAAC
ACCCAGATCAACAACTCTTGGGGGTCTGAGGAGCGAAGTCTGCCCCGAAAAATGCCCTTCGTCCGAGGCC
AGAGCTTCTCGGTGTGGATCTTGTGTGAAGCTCACTGCCTCAAGGTGGCCGTGGATGGTCAGCACGTGTT
TGAATACTACCATCGCCTGAGGAACCTGCCCACCATCAACAAACTGGAAGTGGGTGGCGACATCCAGCTG
ACCCACGTGCAGACATAG

Translation (355 aa):
MAFSGSQAPYLSPAVPFSGTIQGGLQDGFQITVNGAVLSSSGTRFAVDFQTGFSGNDIAFHFNPRFEDGG
YVVCNTRQKGRWGPEERKMHMPFQKGMPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSV
QLSYISFQNPRTVPVQPAFSTVPFSQPVCFPPRPRGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFST
PAIPPMMYPHPAYPMPFITTIPGGLYPSKSIILSGTVLPSAQRFHINLCSGSHIAFHMNPRFDENAVVRN
TQINNSWGSEERSLPRKMPFVRGQSFSVWILCEAHCLKVAVDGQHVFEYYHRLRNLPTINKLEVGGDIQL
THVQT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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