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Report for CCDS25015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25015.1 Public Mus musculus 11 Or1e29 23 108 98 CCDS HistoryNCBI Gene:259011Re-query CCDS DB by CCDS ID:25015.1Re-query CCDS DB by GeneID:259011See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122224.3 ENSMUSP00000113364.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122224.3Link to Ensembl Protein Viewer:ENSMUSP00000113364.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000122224Re-query CCDS DB by Protein ID:ENSMUSP00000113364
Original member Current member EBI ENSMUST00000124927.2 ENSMUSP00000115639.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124927.2Link to Ensembl Protein Viewer:ENSMUSP00000115639.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000124927Re-query CCDS DB by Protein ID:ENSMUSP00000115639
Original member Current member EBI ENSMUST00000215418.1 ENSMUSP00000149734.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215418.1Link to Ensembl Protein Viewer:ENSMUSP00000149734.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215418Re-query CCDS DB by Protein ID:ENSMUSP00000149734
Original member Current member NCBI NM_147009.3 NP_667220.2 Accepted alive Link to Nucleotide Sequence:NM_147009.3Link to Protein Sequence:NP_667220.2Re-query CCDS DB by Nucleotide ID:NM_147009Re-query CCDS DB by Protein ID:NP_667220Link to BLAST:NP_667220.2

Chromosomal Locations for CCDS 25015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73776387 73777325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGACTGGAAACAACCAAACTTTGATATCAAAGTTCCTCCTTCTGGGTCTGCCCATCTTGTCAGAGTATC
ATTTCCTGTTCTATGCCCTGTTCCTGGCCATGTACCTCACCACTATCCTGGGAAACCTGCTAATCATTGC
CCTTGTTCGACTGGATTCCCATCTCCACACACCAATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATCCCCAAATTGCTTCAGAACATGCAGAGCCAAGTACCATCTATATCTT
ATGTTGGCTGCCTGACACAGCTGTACTTCTTTATGGTTTTTGGAGATATGGAAAGCTTTCTTCTTGTGGT
CATGGCCTATGATCGTTATGTGGCCATCTGCTTTCCTTTGCATTACACCAGCATCATGAGTACCAAGTTC
TGTACTTCACTAGTGCTACTACTGTGGATGCTGACAACATCTAATGCCTTGATGCACACCTTGCTCATGG
CTAGATTGTCTTTTTGTGAGAAGAATGTGATTCTCCGCTTTTTCTGTGACATTTCTGCTCTTCTGAAGTT
GTCTTGCTCAGACACTTTTGTTAATGAGTTGATGATATTTATCATGGGAGGTATCATTATTATTATTCCA
TTCCTACTCATAGTTATGTCCTATGTAAGGATTTTCTTCTCCATTCTCAAGGTCCCATCTACACAGGGCA
TCCACAAGGTCTTTTCTACATGTGGATCCCATCTGTCTGTGGTGTCTCTGTTCTATGGAACAATTATTGG
TCTATACTTATGCCCATCAAGTAATAATTCCACTGTAAAAGAGAGTGCCATGGCTATGATGTACACAGTG
GTGACTCCTATGCTGAACCCCTTCATCTACAGTCTGAGGAACAGAGACATGAAGAGAGCCCTAATAAGAG
TTATCTGCAGTAAGAAAATCTCTCTGTAA

Translation (312 aa):
MTGNNQTLISKFLLLGLPILSEYHFLFYALFLAMYLTTILGNLLIIALVRLDSHLHTPMYLFLSNLSFSD
LCFSSVTIPKLLQNMQSQVPSISYVGCLTQLYFFMVFGDMESFLLVVMAYDRYVAICFPLHYTSIMSTKF
CTSLVLLLWMLTTSNALMHTLLMARLSFCEKNVILRFFCDISALLKLSCSDTFVNELMIFIMGGIIIIIP
FLLIVMSYVRIFFSILKVPSTQGIHKVFSTCGSHLSVVSLFYGTIIGLYLCPSSNNSTVKESAMAMMYTV
VTPMLNPFIYSLRNRDMKRALIRVICSKKISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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