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Report for CCDS85096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85096.1 Public Mus musculus 6 Nr2c2 23 108 98 CCDS HistoryNCBI Gene:22026Re-query CCDS DB by CCDS ID:85096.1Re-query CCDS DB by GeneID:22026See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113463.7 ENSMUSP00000109090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113463.7Link to Ensembl Protein Viewer:ENSMUSP00000109090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113463Re-query CCDS DB by Protein ID:ENSMUSP00000109090
Original member NCBI NM_001347342.1 NP_001334271.1 Updated not alive Link to Nucleotide Sequence:NM_001347342.1Link to Protein Sequence:NP_001334271.1Re-query CCDS DB by Nucleotide ID:NM_001347342Re-query CCDS DB by Protein ID:NP_001334271
Current member NCBI NM_001347342.2 NP_001334271.1 Accepted alive Link to Nucleotide Sequence:NM_001347342.2Link to Protein Sequence:NP_001334271.1Re-query CCDS DB by Nucleotide ID:NM_001347342Re-query CCDS DB by Protein ID:NP_001334271Link to BLAST:NP_001334271.1

Chromosomal Locations for CCDS 85096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 92105306 92105365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92139780 92139890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92149604 92149804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92152315 92152417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92154335 92154514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92156572 92156719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92157406 92157499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92158330 92158463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92159212 92159389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92160319 92160440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92161913 92162052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92163121 92163258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92164188 92164293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92167459 92167633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGGCTACAAATATGGAGGGGCTGGTTCAGCACAGAGTGGGGACCCAGCAGGTGGCTGAGGTACCACGTA
CACAGACCTCTTGGCCGGAATCTCCAGGGATGACCAGCCCCTCCCCGCGCATCCAGATAATTTCCACCGA
CTCTGCGGTAGCCTCACCTCAGCGCATTCAGATTGTAACAGACCAGCAGACAGGACAAAAGATCCAGATA
GTCACCGCAGTGGATGCCTCTGGATCCTCTAAACAGCAGTTCATCCTAACCAGCCCAGATGGAGCTGGAA
CTGGGAAGGTGATCCTGGCTTCTCCGGAAACATCCAGTGCCAAGCAGCTCATATTCACCACCTCGGACAA
CCTTGTCCCTGGCAGGATCCAGATCGTCACGGATTCTGCTTCTGTGGAGCGTTTGCTGGGGAAGGCAGAC
GTCCAGCGGCCCCAGGTGGTGGAGTACTGTGTGGTCTGTGGCGACAAAGCCTCTGGCCGGCACTATGGGG
CTGTCAGTTGTGAAGGTTGCAAAGGTTTCTTCAAAAGGAGCGTGAGGAAGAATCTGACCTACAGCTGTCG
GAGCAGCCAAGACTGCATCATCAACAAGCACCACCGTAACCGCTGCCAGTTCTGCCGGCTGAAGAAGTGC
CTGGAGATGGGCATGAAAATGGAGTCTGTACAGAGTGAACGGAAGCCCTTTGATGTGCAACGGGAGAAAC
CAAGCAATTGTGCTGCTTCCACTGAGAAGATCTATATCCGGAAAGACCTGAGAAGTCCTCTGATAGCCAC
TCCCACATTTGTGGCAGACAAAGATGGAGCAAGACAAACAGGTCTTCTTGATCCAGGGATGCTTGTGAAC
ATCCAACAGCCTTTGATACGTGAGGATGGTACAGTTCTCCTGGCCGCGGATTCCAAGGCTGAAACAAGCC
AAGGAGCTCTAGGTACACTGGCAAATGTAGTGACCTCTTTGGCCAACCTGAGTGAATCTTTGAACAACGG
TGATGCTTCAGAAATGCAGCCAGAGGACCAGTCTGCAAGTGAGATTACTCGGGCATTTGACACCTTAGCG
AAAGCACTTAATACCACAGATAGTGCTTCACCTCCAAGCCTGGCAGATGGGATAGATGCTAGTGGAGGAG
GGAGTATCCATGTCATCAGCAGAGATCAGTCAACACCCATCATTGAAGTTGAAGGCCCTCTCCTTTCAGA
CACACATGTCACATTCAAGCTTACAATGCCCAGTCCTATGCCAGAGTACCTCAATGTACATTACATCTGT
GAGTCTGCATCCCGCCTGCTTTTCCTCTCCATGCACTGGGCAAGGTCAATCCCAGCCTTCCAGGCACTTG
GACAGGACTGTAATACCAGCCTGGTGAGGGCCTGCTGGAATGAGCTCTTCACTCTTGGCCTGGCCCAGTG
TGCCCAGGTCATGAGTCTCTCCACCATCCTGGCAGCCATTGTCAACCACCTACAGAACAGCATCCAGGAA
GATAAGCTTTCTGGTGACCGGATAAAGCAAGTGATGGAGCACATCTGGAAGCTGCAGGAGTTCTGTAACA
GCATGGCGAAACTGGATATAGACGGCTATGAGTACGCATACCTTAAAGCTATAGTTCTCTTTAGTCCCGA
TCATCCAGGTTTGACAGGCACAAGCCAGATTGAGAAATTTCAGGAGAAGGCACAGATGGAATTACAGGAC
TATGTGCAGAAAACCTACTCTGAAGATACTTACAGATTGGCCAGGATTCTTGTCCGCCTACCAGCACTCA
GGCTCATGAGCTCCAACATAACAGAAGAACTTTTTTTTACTGGTCTCATTGGCAATGTTTCAATAGACAG
CATAATTCCTTACATCCTCAAGATGGAGACAGCAGAATATAATGGCCAGATCACTGGAGCCAGTCTATAG

Translation (629 aa):
MATNMEGLVQHRVGTQQVAEVPRTQTSWPESPGMTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQI
VTAVDASGSSKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKAD
VQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKC
LEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVN
IQQPLIREDGTVLLAADSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLA
KALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYIC
ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQE
DKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQD
YVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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