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Report for CCDS4249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4249.1 Public Homo sapiens 5 PCDHB7 24 110 108 CCDS HistoryNCBI Gene:56129Re-query CCDS DB by CCDS ID:4249.1Re-query CCDS DB by GeneID:56129See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231137.6 ENSP00000231137.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231137.6Link to Ensembl Protein Viewer:ENSP00000231137.3Re-query CCDS DB by Nucleotide ID:ENST00000231137Re-query CCDS DB by Protein ID:ENSP00000231137
Original member Current member NCBI NM_018940.4 NP_061763.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018940.4Link to Protein Sequence:NP_061763.1Re-query CCDS DB by Nucleotide ID:NM_018940Re-query CCDS DB by Protein ID:NP_061763Link to BLAST:NP_061763.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061763.1 793 Q9Y5E2 793 100% 0 0

Chromosomal Locations for CCDS 4249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141172836 141175217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGAGGCCAGAGTGGAGCGTGCTGTGCAGAAAAGGCAAGTCTTATTTCTTTGTGTATTTCTGGGAATGT
CTTGGGCTGGCGCCGAACCGCTTCGGTATTTTGTGGCGGAGGAAACCGAGAGAGGCACCTTTCTTACCAA
CTTGGCAAAAGACCTAGGGTTAGGGGTAGGGGAACTGAGAGCCCGGGGAACTAGAATTGTTTCAGACCAG
AACATGCAAATTTTACTGCTCAGTTCGCTTACTGGTGATCTACTTCTAAATGAGAAATTGGACCGAGAGG
AACTGTGTGGCCCCAGAGAGCCCTGTGTGCTGCCTTTCCAGTTGTTATTGGAAAAACCTTTTCAGATTTT
CCGTGCTGAACTATGGGTCAGAGACATCAATGATCACGCTCCAGTATTTCTAGACAGAGAGATTTCCTTG
AAAATATTAGAAAGTACCACTCCAGGGGCGGCATTTCTCCTAGAGAGTGCACAGGATTCAGATGTTGGAA
CCAACAGCCTGAGTAACTACACCATCAGCCCCAATGCCTATTTCCATATTAATGTCCATGATAGCGGGGA
GGGGAATATCTATCCCGAATTGGTGCTGAATCAAGTGCTGGATCGGGAAGAGATACCAGAGTTCAGTTTA
ACCCTCACCGCTTTAGACGGCGGCTCTCCTCCAAGATCAGGGACCGCCCTCGTGCGCATTCTGGTTCTAG
ACGTAAATGACAACGCCCCTGATTTTGTGCGGTCGCTCTACAAGGTGCAGGTGCCCGAAAATAGCCCCGT
TGGTTCCATGGTTGTCTCCGTGTCAGCCAGAGATTTAGATACCGGAAGTAATGGGGAAATAGCCTATGCA
TTTTCTTACGCCACTGAAAGAATTCTCAAAACGTTTCAAATCAATCCAACATCTGGCAGTCTTCATCTTA
AAGCGCAATTGGACTATGAGGCAATTCAAACTTACACATTAACTATTCAGGCCAAAGACGGCGGCGGGCT
TTCTGGAAAATGCACTGTAGTGGTTGATGTAACAGATATAAACGATAATCGACCCGAGCTGCTCCTGTCT
TCACTTACTAGCCCAATTGCAGAAAACTCACCCGAGACAGTCGTGGCTGTTTTTAGGATTAGAGACAGAG
ATTCCGGGAACAATGGAAAGACAGTGTGCTCCATCCAGGACGATGTCCCCTTCATCCTGAAGCCATCTGT
CGAAAACTTCTATACTCTGGTAACAGAGAAACCTTTGGATCGAGAGAGGAACACTGAGTACAACATCACC
ATCACCGTCACCGACTTGGGGACACCCAGGCTGAAAACCGAGCACAACATAACCGTGCTGGTCTCCGACG
TCAATGACAACGCTCCCGCCTTCACCCAAACCTCCTACACCCTGTTTGTCCGTGAGAACAACAGCCCCGC
CCTGCCCATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCATCTACTCCCTG
CTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGT
TTGCCCTCAGGTCCCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGCGCCACAGACCGCGG
CTCCCCCGCGCTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACAGCTCCGCGCCCTGCACCGAGCCGTTGCCCCGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTGCGTACCGCCAGGCTGCTG
AGCGAGCGCGACGCAGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG
CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCGGCTCCCGGAGGCGGC
CCCGGACCAGGCCAACTCGCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTCTTCCTC
CTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTGGGTCGCTGCT
CGGTGCCTGAGGGCCCCTTTCCACGACATCTGGTGGACTTGAGCGGCACCGGGACCCTATCCCAGAGCTA
CCAGTATGAGGTGTGCCTGACTGGAGGCTCCGGGACAAATGAGTTCAAGTTTCTGAAACCAATTATCCCC
AACCTGCTACCCCAGAGCACAGGCAGGGAAGTGGAAGAAAATCGCCCATTTCAGAATAATTTGGGTTTCT
GA

Translation (793 aa):
MEARVERAVQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELRARGTRIVSDQ
NMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAELWVRDINDHAPVFLDREISL
KILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHINVHDSGEGNIYPELVLNQVLDREEIPEFSL
TLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYA
FSYATERILKTFQINPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLS
SLTSPIAENSPETVVAVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNIT
ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDSGTNAQVIYSL
LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPF
VLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLRLPEAAPDQANSLTVYLVVALASVSSLFL
LSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIP
NLLPQSTGREVEENRPFQNNLGF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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