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Report for CCDS78301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78301.1 Public Homo sapiens 8 USP17L3 24 110 108 CCDS HistoryNCBI Gene:645836Re-query CCDS DB by CCDS ID:78301.1Re-query CCDS DB by GeneID:645836See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 78301.1
This CCDS representation lacks full-length human transcript support. Its representation is therefore inferred, but it is supported by paralogous transcripts.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 78301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530484.1 ENSP00000485323.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530484.1Link to Ensembl Protein Viewer:ENSP00000485323.1Re-query CCDS DB by Nucleotide ID:ENST00000530484Re-query CCDS DB by Protein ID:ENSP00000485323
Original member Current member NCBI NM_001256871.1 NP_001243800.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256871.1Link to Protein Sequence:NP_001243800.1Re-query CCDS DB by Nucleotide ID:NM_001256871Re-query CCDS DB by Protein ID:NP_001243800Link to BLAST:NP_001243800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243800.1 530 A6NCW0 530 100% 0 0

Chromosomal Locations for CCDS 78301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 7976393 7977985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGGGGATGACTCACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTC
GGCCAGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATCTGAGAC
CCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTCGCTCCCAGGGAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATGGGAAATACCTGCTACGAGAACGCTT
CCCTGCAGTGCCTGACATACACACTGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCTCAAACATG
TCAGCGTCCCAAGTGCTGCATGCTCTGTACTATGCAAGCTCACATCACATGGGCCCTCCACAGTCCTGGC
CATGTCATCCAGCCCTCACAGGCATTGGCTTCTGGCTTCCATAGAGGCAAGCAGGAAGATGTCCATGAAT
TTCTCATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGCCACAAGCAGGTAGATCATCACTC
TAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTGCTGGAGATCTCAAATCAAGTGTCTCCACTGC
CACGGGATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCA
AGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAGAGAATGCCTATCATTGCGGTCTTTG
TCTCCAGAGGGCGCCGGCCTCCAACACGTTAACTTTACACACTTCTGCCAAGGTCCTCATCCTTGTCTTG
AAGAGATTCTCCGATGTCGCAGGCAACAAACTTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGC
AGCCATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACGACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCGAGGTCACTGTCTGTAGCATCACTTCTGTCCTGAGTCAACAGGCCTATGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTCGGCGCTGA
AGACACAGACAGGCGAGCAAAGCAAGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCACCCGAGTTG
GACGAGCACTTGGTGGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCTCCAAGAGCAAA
ACAAAACGAAGCCTGAGTTCAACGTCGGAAAAGTCGAAGGTACCCTGCCTCCCAACGCACTTGTGATTCA
TCAATCAAAATACAAGTGTGGGATGAAAAACCATCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGACGACCCGGACAGATCAGGAGTCCATGAACACTGGCACACTCGCTTCTCTGCAAGGGAGGACCAGGA
GAGCCAAAGGGAAGAACAAACACAGCAAGAGGGCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPL
SSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPG
HVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHC
HGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVL
KRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMD
DAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPEL
DEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLS
STTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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