NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19485.1 Public Mus musculus 5 Ibsp 23 108 98 CCDS HistoryNCBI Gene:15891Re-query CCDS DB by CCDS ID:19485.1Re-query CCDS DB by GeneID:15891See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031246.8 ENSMUSP00000031246.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031246.8Link to Ensembl Protein Viewer:ENSMUSP00000031246.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031246Re-query CCDS DB by Protein ID:ENSMUSP00000031246
Original member Current member NCBI NM_008318.3 NP_032344.2 Accepted alive Link to Nucleotide Sequence:NM_008318.3Link to Protein Sequence:NP_032344.2Re-query CCDS DB by Nucleotide ID:NM_008318Re-query CCDS DB by Protein ID:NP_032344Link to BLAST:NP_032344.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032344.2 324 Q61711 324 100% 0 0

Chromosomal Locations for CCDS 19485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104302137 104302190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104302282 104302332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104302423 104302500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104305981 104306046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104309276 104309449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104310022 104310573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAAGACTGCTTTAATTTTGCTCAGCATTTTGGGAATGGCCTGTGCTTTCTCGATGAAAAATTTCCATC
GAAGAATCAAAGCAGAGGATTCTGAAGAAAACGGGGTCTTTAAGTACCGGCCACGCTACTTTCTTTATAA
GCATGCCTACTTTTATCCTCCTCTGAAACGGTTTCCAGTCCAGGGAGGCAGTGACTCTTCAGAAGAAAAT
GGAGACGGCGATAGTTCCGAAGAGGAGGGGGAGGAAGAGGAGACTTCAAACGAAGAGGAAAACAATGAAG
ATTCTGAGGGGAATGAAGACCAGGAGGCGGAGGCAGAGAACTCCACACTTTCCACACTCTCGGGTGTAAC
AGCTAGCTACGGAGCAGAGACCACACCCCAAGCACAGACTTTTGAGTTAGCGGCACTCCAACTGCCCAAG
AAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAGGAAGAAGAAGAAGAAGAGG
AAGAGGAAGAAAATGAGAACGAAGAAGCAGAAGTGGATGAAAACGAGCTGGCGGTCAACGGCACCAGCAC
CAACTCCACGGAGGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAG
GAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTGTTGGCACCC
AGACAGCTGTCCTTCTGAACGGGTTTCAGCAGACAACCCCACCGCCCGAAGCCTATGGGACCACCTCGCC
ACCGATCAGAAAAAGCAGCACCGTTGAGTATGGGGGAGAATACGAACAAACAGGCAACGAATACAACAAT
GAGTATGAAGTCTATGACAACGAGAACGGGGAGCCTCGTGGCGACACTTACCGAGCTTATGAGGATGAAT
ACAGCTACTACAAGGGGCATGGCTATGAAGGCTACGAGGGTCAGAATTATTACTACCATCAGTGA

Translation (324 aa):
MKTALILLSILGMACAFSMKNFHRRIKAEDSEENGVFKYRPRYFLYKHAYFYPPLKRFPVQGGSDSSEEN
GDGDSSEEEGEEEETSNEEENNEDSEGNEDQEAEAENSTLSTLSGVTASYGAETTPQAQTFELAALQLPK
KAGDAESRAPKVKESDEEEEEEEEEEENENEEAEVDENELAVNGTSTNSTEVDGGNGSSGGDNGEEAEAE
EASVTEAGAEGTTGGRELTSVGTQTAVLLNGFQQTTPPPEAYGTTSPPIRKSSTVEYGGEYEQTGNEYNN
EYEVYDNENGEPRGDTYRAYEDEYSYYKGHGYEGYEGQNYYYHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH