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Report for CCDS37201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37201.1 Public Mus musculus 15 Tmbim6 23 108 98 CCDS HistoryNCBI Gene:110213Re-query CCDS DB by CCDS ID:37201.1Re-query CCDS DB by GeneID:110213See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023749.14 ENSMUSP00000023749.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023749.14Link to Ensembl Protein Viewer:ENSMUSP00000023749.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023749Re-query CCDS DB by Protein ID:ENSMUSP00000023749
Original member Current member EBI ENSMUST00000160635.7 ENSMUSP00000124651.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160635.7Link to Ensembl Protein Viewer:ENSMUSP00000124651.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160635Re-query CCDS DB by Protein ID:ENSMUSP00000124651
Original member Current member EBI ENSMUST00000159209.7 ENSMUSP00000125117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159209.7Link to Ensembl Protein Viewer:ENSMUSP00000125117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159209Re-query CCDS DB by Protein ID:ENSMUSP00000125117
Original member Current member EBI ENSMUST00000159531.2 ENSMUSP00000125318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159531.2Link to Ensembl Protein Viewer:ENSMUSP00000125318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159531Re-query CCDS DB by Protein ID:ENSMUSP00000125318
Original member Current member EBI ENSMUST00000161250.7 ENSMUSP00000125563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161250.7Link to Ensembl Protein Viewer:ENSMUSP00000125563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161250Re-query CCDS DB by Protein ID:ENSMUSP00000125563
Original member Current member NCBI NM_001171034.1 NP_001164505.1 Accepted alive Link to Nucleotide Sequence:NM_001171034.1Link to Protein Sequence:NP_001164505.1Re-query CCDS DB by Nucleotide ID:NM_001171034Re-query CCDS DB by Protein ID:NP_001164505Link to BLAST:NP_001164505.1
Original member Current member NCBI NM_001171035.1 NP_001164506.1 Accepted alive Link to Nucleotide Sequence:NM_001171035.1Link to Protein Sequence:NP_001164506.1Re-query CCDS DB by Nucleotide ID:NM_001171035Re-query CCDS DB by Protein ID:NP_001164506Link to BLAST:NP_001164506.1
Original member Current member NCBI NM_001171036.1 NP_001164507.1 Accepted alive Link to Nucleotide Sequence:NM_001171036.1Link to Protein Sequence:NP_001164507.1Re-query CCDS DB by Nucleotide ID:NM_001171036Re-query CCDS DB by Protein ID:NP_001164507Link to BLAST:NP_001164507.1
Original member Current member NCBI NM_026669.4 NP_080945.1 Accepted alive Link to Nucleotide Sequence:NM_026669.4Link to Protein Sequence:NP_080945.1Re-query CCDS DB by Nucleotide ID:NM_026669Re-query CCDS DB by Protein ID:NP_080945Link to BLAST:NP_080945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164505.1 237 Q9D2C7 237 100% 0 0
NP_001164506.1 237 Q9D2C7 237 100% 0 0
NP_001164507.1 237 Q9D2C7 237 100% 0 0
NP_080945.1 237 Q9D2C7 237 100% 0 0

Chromosomal Locations for CCDS 37201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99401608 99401663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99402061 99402169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99404414 99404534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99405717 99405765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99405861 99405958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99406152 99406231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99406577 99406677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99407268 99407343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99408475 99408498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAATATATTTGATCGGAAGATCAACTTTGATGCCCTCTTAAAATTTTCCCACATAACTCCCTCGACAC
AGCAGCACCTAAAGAAGGTCTATGCCAGTTTTGCACTATGTATGTTTGTGGCGGCAGCAGGGGCCTATGT
CCATGTGGTCACACACTTCATCCAGGCTGGCCTACTCTCCGCCCTGGGCTCCTTGGCCTTGATGATTTGG
CTGATGGCAACACCTCACAGCCATGAGACCGAGCAAAAGAGACTGGGACTTCTCGCTGGCTTCGCCTTCC
TCACAGGAGTCGGCCTGGGACCTGCCCTGGAGCTGTGCATCGCTGTCAACCCCAGCATCCTCCCCACGGC
CTTCATGGGCACGGCCATGATCTTCACCTGCTTCAGCCTGAGCGCCCTGTATGCCCGGCGCCGGAGCTAC
CTGTTTTTAGGAGGTATCTTGATGTCAGCCATGAGCCTCATGCTCCTGTCCTCTCTGGGGAACCTTTTCT
TTGGCTCCATTTGGCTGTTCCAGGCAAACCTGTACCTGGGACTGCTGGTCATGTGTGGCTTTGTCCTCTT
TGATACTCAGCTCATTATTGAGAAGGCTGAACACGGAGATAAGGATTACATCTGGCACTGCGTTGACCTC
TTCCTAGATTTCGTTACCCTCTTCAGGAAGCTCATGTTGATCCTGGCCTTCAATGAGAAGGACAAGAAGA
AAGAAAAGAAGTGA

Translation (237 aa):
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLALMIW
LMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSALYARRRSY
LFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCVDL
FLDFVTLFRKLMLILAFNEKDKKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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