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Report for CCDS23829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23829.1 Public Mus musculus 10 Hace1 23 108 98 CCDS HistoryNCBI Gene:209462Re-query CCDS DB by CCDS ID:23829.1Re-query CCDS DB by GeneID:209462See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037044.12 ENSMUSP00000039206.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037044.12Link to Ensembl Protein Viewer:ENSMUSP00000039206.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037044Re-query CCDS DB by Protein ID:ENSMUSP00000039206
Original member Current member NCBI NM_172473.3 NP_766061.2 Accepted alive Link to Nucleotide Sequence:NM_172473.3Link to Protein Sequence:NP_766061.2Re-query CCDS DB by Nucleotide ID:NM_172473Re-query CCDS DB by Protein ID:NP_766061Link to BLAST:NP_766061.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766061.2 909 Q3U0D9-1 909 100% 0 0

Chromosomal Locations for CCDS 23829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 45578075 45578150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45588380 45588434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45589481 45589570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45590268 45590372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45605509 45605584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45618498 45618629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45638321 45638403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45648591 45648687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45648854 45648955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45649881 45649987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45652588 45652738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45670346 45670680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45671132 45671200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45671439 45671526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45672328 45672439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45672539 45672636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45672774 45672861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45676381 45676530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45677067 45677263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45686602 45686733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45700577 45700675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45700954 45701024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45709881 45709994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45711434 45711536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2730 nt):
ATGGAGAGAGCGATGGAGCAGCTCAACCGTCTGACGCGCTCGCTGCGCCGCGCGCGCACCGTGGAGCTGC
CCGAGGATAATGAGACTGCTGTTTACACACTGATGCCAATGGTGATGGCCGACCAGCACAGGTCTGTTTC
TGAACTCCTATCAAATTCAAAATTTGATGTCAATTATGCATTCGGACGTGTGAAGAGAAGCTTGCTTCAC
ATTGCTGCAAACTGTGGATCTGTGGAATGCTTGGTTCTTCTGTTGAAGAAAGGCGCAAACCCTAACTATC
AAGATATTTCAGGCTGTACACCCCTTCATCTCGCTGCTAGAAATGGACAGAAGAAATGCATGAGTAAATT
ACTGGAGTACAGTGCGGATGTCAACATTTGTAATAATGAAGGCCTTACAGCAATACACTGGCTGGCTGTG
AATGGGAGGACAGAGCTCCTCCATGACCTCGTGCAACACGTCACAGATGTGGATGTGGAGGATGCCATGG
GGCAGACAGCGCTACACGTAGCCTGCCAGAACGGGCACAAAACGACAGTGCAGTGCTTGCTAGACAGCGG
TGCTGATATTAACAGGCCGAATGTATCAGGAGCCACGCCACTGTACTTTGCTTGCAGTCATGGTCAGAGA
GATACTGCACAGATTCTTCTATTACGAGGAGCCAAATATTTACCAGATAAAAATGGAGTAACCCCTCTAG
ATCTATGTGTACAGGGTGGTTACGGACAGACTTGTGAAGTGTTAATTCAGTACCACCCGAGGCTTTTCCA
GACTATTGTTCAAATGACACAGAATGAAGACCTTCGGGAAAACATGTTACGGCAAGTTCTGCAGCATTTG
TCTCAGCAAAGTGAAAGCCAGTACCTAAAGATCCTGACAGGCCTTGCTGAAGTTGCTACGACAAATGGCC
ATAAGCTGCTTAGTTTATCTAGCAATTATGATGCGCAGATGAAGAGCCTTTTGAGGATTGTGAGGATATT
TTGTCATGTCTTTCGAATTGGTCCCTCATCTCCCAGTAATGGAATCGATATGGGCTACAATGGAAATAAA
ACTCCAAGAAGCCAGGTGTTCAAGCCTTTGGAATTGCTTTGGCACTCATTGGATGAATGGTTAGTTTTAA
TAGCCACAGAATTAATGAAAAACAAAGAGGATTCAACAGATATTACTTCTATCTTGCTGAAACAAAAAGG
CCAGGATCAAGAGGCCCCTTCTCTTTCTGCATTTGAGCCACCAGGCCCTGGGAGCTATGAAAGCCTGCCC
CCTGGTCCAGGGGACTCCAAGCCAGAGGTGCTTGCAGGGGAGCAGGAAGCCAGTGCCGACTGTCAAGACG
TCATCTCTGTGACAGCCAACCGGCTGAGTGCTGTCATTCAAGCCTTCTACATGTGCTGTTCCTGTCAGAT
GCCTCCAGGAATGACTTCACCTCGTTTCATTGAGTTTGTCTGCAAGCATGATGAAGTATTGAAATGCTTT
GTGAATAGAAACCCCAAAATTATATTTGACCATTTTCACTTTCTTCTTGAATGTCCTGAATTGATGTCAA
GATTCATGCATATCATAAAAGCACAGCCATTTAAAGATCGATGTGAGTGGTTCTATGAACATCTGCACTC
AGGACAGCCGGACTCAGACATGGTCCACAGACCAGTGAGTGAGAACGATATCCTCCTGGTTCACAGAGAT
TCTATTTTTAGGAGTAGCTGTGAAATTGTATCAAAAGCAAACTGTGCAAAGCTAAAGCAGGGGATTGCTG
TACGATTTCATGGAGAAGAAGGCATGGGTCAAGGCGTTGTGCGTGAATGGTTTGATATTCTGTCTAATGA
GATCGTCAACCCTGACTATGCACTGTTCACCCAGTCAGCAGACGGAACAACTTTCCAGCCCAACAGCAAC
TCCTATGTCAATCCTGATCACTTGAACTATTTCCGGTTTGCTGGACAGATCTTGGGGTTAGCTTTGAACC
ACAGGCAGCTGGTCAATATTTACTTCACACGATCATTCTACAAGCACATTCTCGGTATTCCTGTAAATTA
CCAAGATGTAGCATCTATTGATCCTGAATATGCCAAAAATTTGCAATGGATTTTAGATAATGATATTAGT
GACTTGGGTCTAGAATTGACTTTTTCTGTTGAGACTGATGTATTTGGAGCTATGGAAGAGGTGCCTTTAA
AGCCTGGGGGTGGAAGTATTCTTGTGACACAAAATAACAAAGCGGAGTATGTCCAGCTCGTTACTGAACT
GCGTATGACAAGAGCCATTCAGCCGCAGATCAATGCGTTTTTACAGGGTTTTCATATGTTCATCCCGCCT
TCCCTCATACAACTGTTTGACGAGTATGAATTGGAGCTACTGCTTTCTGGCATGCCGGAAATTGATGTAA
ATGATTGGATAAAAAATACAGAATACACAAGTGGCTATGAAAGAGAAGATCCAGTTATTCAGTGGTTCTG
GGAAGTTGTGGAAGACATTACTCAAGAAGAAAGAGTTCTTCTCTTGCAGTTCGTTACTGGCAGTTCCAGG
GTCCCGCATGGTGGCTTTGCCAATATTATGGGTGGAAGTGGTTTGCAAAACTTTACAATTGCTGCTGTGC
CATATACTCCAAATCTTTTACCAACTTCCAGCACATGCATCAACATGCTCAAGTTACCTGAATACCCAAG
TAAAGAAATACTCAAGGACAGACTCCTTGTAGCACTGCATTGTGGCAGCTATGGTTATACAATGGCATAA

Translation (909 aa):
MERAMEQLNRLTRSLRRARTVELPEDNETAVYTLMPMVMADQHRSVSELLSNSKFDVNYAFGRVKRSLLH
IAANCGSVECLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSADVNICNNEGLTAIHWLAV
NGRTELLHDLVQHVTDVDVEDAMGQTALHVACQNGHKTTVQCLLDSGADINRPNVSGATPLYFACSHGQR
DTAQILLLRGAKYLPDKNGVTPLDLCVQGGYGQTCEVLIQYHPRLFQTIVQMTQNEDLRENMLRQVLQHL
SQQSESQYLKILTGLAEVATTNGHKLLSLSSNYDAQMKSLLRIVRIFCHVFRIGPSSPSNGIDMGYNGNK
TPRSQVFKPLELLWHSLDEWLVLIATELMKNKEDSTDITSILLKQKGQDQEAPSLSAFEPPGPGSYESLP
PGPGDSKPEVLAGEQEASADCQDVISVTANRLSAVIQAFYMCCSCQMPPGMTSPRFIEFVCKHDEVLKCF
VNRNPKIIFDHFHFLLECPELMSRFMHIIKAQPFKDRCEWFYEHLHSGQPDSDMVHRPVSENDILLVHRD
SIFRSSCEIVSKANCAKLKQGIAVRFHGEEGMGQGVVREWFDILSNEIVNPDYALFTQSADGTTFQPNSN
SYVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDIS
DLGLELTFSVETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPP
SLIQLFDEYELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSR
VPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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