NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48857.1 Public Mus musculus 11 Sarm1 23 108 98 CCDS HistoryNCBI Gene:237868Re-query CCDS DB by CCDS ID:48857.1Re-query CCDS DB by GeneID:237868See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108287.9 ENSMUSP00000103922.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108287.9Link to Ensembl Protein Viewer:ENSMUSP00000103922.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108287Re-query CCDS DB by Protein ID:ENSMUSP00000103922
Original member Current member NCBI NM_001168521.1 NP_001161993.1 Accepted alive Link to Nucleotide Sequence:NM_001168521.1Link to Protein Sequence:NP_001161993.1Re-query CCDS DB by Nucleotide ID:NM_001168521Re-query CCDS DB by Protein ID:NP_001161993Link to BLAST:NP_001161993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161993.1 764 Q6PDS3-3 764 100% 0 0

Chromosomal Locations for CCDS 48857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78474903 78475032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78475207 78475328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78483157 78483346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78483434 78483656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487223 78487458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487564 78487655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487916 78488128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78490567 78491185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78496989 78497458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2295 nt):
ATGGTCCTGACGCTGCTCTTCTCCGCCTACAAACTGTGCCGCTTCTTCACCATGTCAGGCCCACGGCCGG
GCGCCGATCGGCTGACAGTGCCCGGACCGGATCGGAGTGGTGGCGCCAGCCCATGGTGGGCTGCGGGCGG
TCGCGGGTCTCGCGAAGTGTCGCCCGGAGTGGGCACTGAGGTGCAAGGCGCCCTGGAGCGTTCGCTGCCT
GAGCTGCAGCAGGCGCTGTCCGAGCTGAAACAGGCAAGCGCGGCGCGGGCTGTGGGCGCGGGTCTCGCCG
AGGTCTTCCAGCTGGTAGAGGAAGCCTGGCTGCTGCCGGCCGTGGGCCGCGAGGTGGCCCAAGGTCTATG
CGATGCTATACGTCTGGACGGTGGCCTCGACTTGCTGTTGCGGCTGCTTCAGGCACCGGAGCTAGAGACC
CGTGTGCAGGCCGCGCGCTTGCTGGAGCAGATCCTGGTGGCTGAGAACCGGGACCGCGTGGCGCGCATCG
GTCTAGGCGTGATCTTGAACCTGGCGAAGGAGCGCGAGCCTGTGGAACTGGCACGAAGCGTGGCGGGCAT
CTTGGAGCACATGTTCAAGCACTCGGAGGAGACGTGCCAGCGGCTGGTGGCGGCCGGAGGCCTCGACGCG
GTGCTGTACTGGTGCCGCCGCACAGACCCGGCGCTGCTGCGCCACTGCGCTCTTGCGCTGGCGAACTGCG
CGCTGCACGGGGGCCAGACGGTGCAGCGGTGCATGGTGGAGAAGCGCGCCGCCGAGTGGCTCTTCCCGCT
CGCTTTCTCCAAGGAGGACGAGCTGCTGCGGCTGCACGCCTGCCTGGCGGTGGCGGTGTTGGCTACCAAC
AAGGAGGTGGAACGCGAGGTCGAGCATTCTGGCACATTGGCGCTTGTCGAGCCGCTCGTGGCATCGCTGG
ACCCCGGCCGCTTCGCCCGCTGCCTGGTGGATGCCAGTGACACAAGCCAGGGTCGTGGACCAGACGACCT
GCAGAGCCTGGTGCTGTTGCTCGATTCGTCGCGTTTGGAGGCTCAGTGCATAGGAGCATTCTACCTGTGC
GCAGAGGCTGCCATCAAGAGCCTACAGGGAAAGACCAAGGTGTTCAGCGACATCGGCGCTATCCAGAGCC
TGAAACGCCTGGTTTCTTACTCTACGAATGGCACCACGTCGGCGCTGGCCAAGCGCGCGCTGCGCCTATT
GGGCGAGGAGGTGCCAAGGCGCATCCTGCCCTGCGTGGCCAGCTGGAAGGAAGCTGAGGTCCAGACCTGG
CTACAGCAGATCGGCTTCTCCCAGTACTGCGAGAACTTTCGGGAGCAGCAGGTAGATGGTGACCTGCTTC
TAAGACTCACAGATGAAGAACTCCAGACAGACCTAGGCATGAAATCAAGCATCACCCGCAAGAGGTTCTT
TAGGGAGCTCACAGAGCTCAAGACCTTCGCCAGCTACGCTACTTGCGACCGCAGCAACCTAGCGGACTGG
CTGGGCAGCCTGGATCCTCGCTTCCGCCAGTACACCTATGGCCTGGTCAGCTGCGGTCTGGACCGCTCCC
TGCTGCACCGCGTGTCAGAGCAGCAGCTCCTGGAGGACTGTGGCATCCGCCTGGGAGTGCACCGCACGCG
CATCCTCTCTGCAGCCAGAGGTCACTTTGCCCAGACTGGCCTGAGAAGCTTGAGGAGACCAAGTCTCCAC
GATGATGGACCCCGTGATAAGCAGTGGGGAAGAGCCACCCTCACCTCCATGTCTCTTTCCTTGGCTCCAG
AAATGCTACATTCCCCGCTGCCCTGTACTGGAGGCAAGCTCAGTGGGGACACCCCAGATGTCTTTATCAG
TTACCGGAGGAACTCAGGGTCCCAGCTGGCCAGCCTCCTGAAGGTGCACCTGCAGCTTCACGGCTTCAGC
GTCTTCATCGACGTGGAGAAGCTGGAAGCCGGCAAATTCGAGGACAAGCTTATCCAAAGCGTCATAGCGG
CTCGCAATTTTGTCCTGGTGCTGTCTGCTGGGGCGCTGGATAAGTGCATGCAGGACCATGACTGCAAGGA
CTGGGTGCACAAGGAGATTGTGACTGCTTTAAGCTGTGGCAAGAACATTGTGCCCATCATTGATGGCTTT
GAGTGGCCTGAGCCTCAGGCGCTGCCTGAGGATATGCAGGCTGTACTCACCTTCAACGGCATCAAATGGT
CCCATGAGTACCAGGAGGCCACCATCGAGAAGATCATCCGCTTCCTACAGGGCCGCCCCTCTCAGGACTC
CTCTGCCGGATCGGATACCAGTTTGGAGGGAGCTACGCCAATGGGTCTGCCTTAA

Translation (764 aa):
MVLTLLFSAYKLCRFFTMSGPRPGADRLTVPGPDRSGGASPWWAAGGRGSREVSPGVGTEVQGALERSLP
ELQQALSELKQASAARAVGAGLAEVFQLVEEAWLLPAVGREVAQGLCDAIRLDGGLDLLLRLLQAPELET
RVQAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDA
VLYWCRRTDPALLRHCALALANCALHGGQTVQRCMVEKRAAEWLFPLAFSKEDELLRLHACLAVAVLATN
KEVEREVEHSGTLALVEPLVASLDPGRFARCLVDASDTSQGRGPDDLQSLVLLLDSSRLEAQCIGAFYLC
AEAAIKSLQGKTKVFSDIGAIQSLKRLVSYSTNGTTSALAKRALRLLGEEVPRRILPCVASWKEAEVQTW
LQQIGFSQYCENFREQQVDGDLLLRLTDEELQTDLGMKSSITRKRFFRELTELKTFASYATCDRSNLADW
LGSLDPRFRQYTYGLVSCGLDRSLLHRVSEQQLLEDCGIRLGVHRTRILSAARGHFAQTGLRSLRRPSLH
DDGPRDKQWGRATLTSMSLSLAPEMLHSPLPCTGGKLSGDTPDVFISYRRNSGSQLASLLKVHLQLHGFS
VFIDVEKLEAGKFEDKLIQSVIAARNFVLVLSAGALDKCMQDHDCKDWVHKEIVTALSCGKNIVPIIDGF
EWPEPQALPEDMQAVLTFNGIKWSHEYQEATIEKIIRFLQGRPSQDSSAGSDTSLEGATPMGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH