NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS59623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59623.1 Public Mus musculus 16 Atp13a4 23 108 98 CCDS HistoryNCBI Gene:224079Re-query CCDS DB by CCDS ID:59623.1Re-query CCDS DB by GeneID:224079See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057018.14 ENSMUSP00000060987.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057018.14Link to Ensembl Protein Viewer:ENSMUSP00000060987.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057018Re-query CCDS DB by Protein ID:ENSMUSP00000060987
Original member Current member NCBI NM_172613.4 NP_766201.3 Accepted alive Link to Nucleotide Sequence:NM_172613.4Link to Protein Sequence:NP_766201.3Re-query CCDS DB by Nucleotide ID:NM_172613Re-query CCDS DB by Protein ID:NP_766201Link to BLAST:NP_766201.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766201.3 1174 Q5XF90-2 1174 99.7445% 0 3

Chromosomal Locations for CCDS 59623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29396393 29396593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29403781 29403861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29407541 29407629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29408884 29409077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29409701 29409872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29413729 29413801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29415783 29415879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29417765 29417874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29418542 29418584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29420380 29420459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29421660 29421782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29422587 29422750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29433972 29434096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29440020 29440131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29441155 29441308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29441552 29441638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29449915 29450065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29452571 29452632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29454692 29454880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29455424 29455524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29456548 29456718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29459433 29459567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29469241 29469310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29471889 29472023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29473434 29473503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29475388 29475468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29475558 29475628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29479756 29479902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29490010 29490183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29541244 29541306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGGGTGACCACCTTGAGAAGAGCCAGCATGCTTTACTCAATGAAGGGGACGAGAATGAGATGGAAATAT
TTGGCTATCGGACTCAAGGCTGTCGGAAGGCTCTTTGTCTCATTGGATCCATCTTCTCTCTTGGAATGCT
CCCATTGGTATTTTATTGGAGACCAGCTTGGCGTGTATGGGCAAACTGTGTCCCATGTTCCCTGCAAGAA
GCAGATGTTGTGTTGCTGAAGACAACAGATGAATTCAAAATTTATTCTTGGAAAAAAGTAATATGGATCT
CCCTGTCAGCACTGAGCAGCACATCTGGTCTCACGCCTGACCACCCTCTCATTACAGACGAGGGATACAT
CATAAACAGAGCCATCCGAAAGCCAGATCTAAAGGTGAGATACATAAAAGTGCAGAAAATACGATATGTT
TGGAATAATTTGGAAGGACAGTTTCAGAAAATTGGCTCCCTGGAAGACTGGCTCAGTTCTGCAAAGATAC
ATCAGAAATTTGGATTAGGTCTGACTTCAGAGGAACAAGAGATCAGGAGGTTAATATGTGGGCCTAATGC
TATTGATGTTGAAATCACACCTATTTGGAAACTGCTCATCAAGGAGGTTCTGAATCCATTTTACATCTTT
CAACTCTTCAGCGTCTGTTTGTGGTTCAGTGAAGATTACAAGGAATATGCTCTTGCCATCATCCTCATGT
CTGTCATTTCCATAGCTTTGACCGTGTATGACCTCAGACAGCAATCTGTAAAACTGCACCATCTTGTTGA
ATCCCATAATAGCATTACAGTCTCTGTGTATGAGCGAAAAGCTGGAGCCCAAGACCTGGAATCCCGCCTC
CTGGTGCCTGGAGATTTATTAATTCTGACAGGGAGCAGAGTGCAAATGCCGTGTGACGCCATTCTGATTG
ACGGCAGCTGTGTGGTAGATGAAGGCATGCTGACAGGAGAAAGCATTCCTGTCACTAAAACTCCACTATC
CCAGACAGCTAGTTCTGTGCCCTGGAAGATGCAGTCTGAAGCAGATCCCAGGCGGCATGTTCTCTTCTGT
GGTACGGAGGTGATCCAGGCCAAGGCAGCTGGCTCTGGGGCTGTAAGAGCCGTGGTCCTGCAGACAGGAT
TCAACACTGCAAAGGGGGACCTCGTGAGATCCATCCTGTACCCGAAGCCCATGAACTTCAAGCTCTACAG
GGATGCCATCAGGTTTCTCCTTTGCCTTGAACCTCCGGAGGAGGTGGTAAGGAAAGCCCTGGATGTTATT
ACCATTGCAGTGCCTCCCGCTCTCCCTGCTGCCCTGACCACAGGCATCATCTATGCCCAGAGGAGGCTGA
AAAAGAAGGGCATATTCTGCATTAGCCCCCAGAGGATCAATGTTTGTGGACAGTTAAACCTTGTCTGCTT
CGACAAGACAGGCACCTTAACGAGGGGAGGCTTGGATCCTTGGGGAGTTGTACCCTGTGACCAGAATGGA
TTTCAGGCAGTCCACAGTTTTGCCTCAGGCAAAGCTTTGCCTCAGGGTCCACTGTGTGCAGCCATGGCCA
GCTGCCACTCTCTGATTCTCCTTGATGGCACTATTCAGGGAGACCCTCTGGACCTGAAGATGTTTGAAGC
CACCAAATGGGAAATGACTGCTTCTGGGGATGACTTCCATATCAAGGAAATGCTGGCACACACCATAGTA
GTGAAGCCTACAGACATGGTGGCCCAGGTCCCAGCGGAAGGACTCGCAATCGTCCATCAGTTCCCATTCT
CATCAGCACTACAGAGGATGACGGTCATCGTCCAGGAGATGGGAGGTGGCCGACTGGCGTTCATGAAAGG
TGCACCGGAGAGAGTGGCCAGCTTTTGCCAACCTGACACAGTACCAACTAGTTTTATTAGTGAACTTCAG
ATTTACACAACACAGGGTTTCCGAGTCATAGCTCTGGCCTACAAGAAGCTGGAAATGGACTGCCCCACAA
CTGCCTTGATGAGGGAGAAGGTGGAATCAGACCTGGTATTTCTGGGATTGCTGATCCTGGAGAATCGATT
GAAGGAAGAGACCAAGCCTGTGTTAGAAGAGCTCATCTCTGCCCGGATACGGACTGTCATGATCACAGGT
GACAATCTTCAGACTGCAATAACAGTGGCTAGGAAGTCTGGGATGGTTTCCGAAGGCCAGAAAGTCATTC
TTGTTGAGGCAAATGAAGCCACTGGCTCTTCATCGGCATCTATCTCTTGGAAATTAGTGGAAGAGAAGAA
ACCTGGTCCATTTGGGAGTCAGGACACCTATATCAACATTAGAGAGGAAGTCCCAGAAAATGGCAGAGAC
GGAAGCTACCATTTTGCCCTGAGTGGAAAATCCTTTCATGTTATAAGCCAATATTTCAGCAGCTTATTGC
CAAAGATACTGATCAATGGGACCATCTTTGCAAGAATGTCTCCTGGGCAAAAGTCAAGCCTGGTGGAAGA
ATTCCAGAAACTGGACTACTTTGTAGGTATGTGTGGAGATGGTGCCAATGACTGTGGGGCCCTGAAGATG
GCTCATGTCGGTATCTCTTTATCAGAGCAGGAGGCATCGGTGGCCTCTCCTTTCACTTCCAAGACTCCAA
ACATCGAATGCGTGCCACATCTCATCAAGGAAGGCCGCGCTGCTCTCGTTACATCCTTTTGCATGTTTAA
GTACATGGCCCTCTACAGCATGATTCAGTATGTTGGTGTTCTGCTGCTCTACTGGAAGACAAACAGCCTT
TCAAATTACCAGTTTCTATTCCAGGATCTGGCCATCACGACTCTTATTGGTGTAACAATGAATCTGAATG
GTGCCAACCCCAAGCTCGTGCCTTTCAGACCCGCAGGGCGGCTGATCTCACCACCTCTTCTGCTCTCGGT
TGTCCTCAACATCCTGCTCAGTTTGGCCATGCACATCGTGGGCTTCATCCTGGTGCAGAAGCAGCCTTGG
TATATCATGGACTATCACAGTGTCTGCCCTGTGAGGAATGAGAGCGCCTCAGCCTTAGCTGCATCTCCCA
GCGTTCCTGAGAAAACCAGAAGTAACAGCACCTTTGCGAGTTTTGAGAATACGACAATATGGTTTTTGGG
AACAATCAACTGTATCTTTGTGGCTCTTGTATTCTCTAAAGGAAAGCCATTTAGGCAGCCCACCTATACA
AACTATATATTTGTCCTTGTGCTGATCTTACAGATGGGCGTATGTCTTTTCATTCTATTTGCGGATATCC
CAGAGATGCATAGGCGTTTGGACCTGCTCTGCACTCCTGTCCTGTGGAGAGTCTACATTCTCATCATGAT
CAGCTCCAACTTTGTTGTGTCCCTTGCTGTGGAGAAGGCCATTATTGAAAACCGAGCTCTGTGGATAGCA
GTCAAAAGATGTTTTGGTTATCAATCAAAAAGTCAGTATCGGATATGGCAGAGGAACTTGGCAAATGATT
CAAGCTGGCCCCCACTGAACCAAACCTCCTACTCTGACATGCAGGGGGTGTCCTACAGCAACCCGGTGTT
TGAGAGCAATGAGGAGCAACTTTGA

Translation (1174 aa):
MGDHLEKSQHALLNEGDENEMEIFGYRTQGCRKALCLIGSIFSLGMLPLVFYWRPAWRVWANCVPCSLQE
ADVVLLKTTDEFKIYSWKKVIWISLSALSSTSGLTPDHPLITDEGYIINRAIRKPDLKVRYIKVQKIRYV
WNNLEGQFQKIGSLEDWLSSAKIHQKFGLGLTSEEQEIRRLICGPNAIDVEITPIWKLLIKEVLNPFYIF
QLFSVCLWFSEDYKEYALAIILMSVISIALTVYDLRQQSVKLHHLVESHNSITVSVYERKAGAQDLESRL
LVPGDLLILTGSRVQMPCDAILIDGSCVVDEGMLTGESIPVTKTPLSQTASSVPWKMQSEADPRRHVLFC
GTEVIQAKAAGSGAVRAVVLQTGFNTAKGDLVRSILYPKPMNFKLYRDAIRFLLCLEPPEEVVRKALDVI
TIAVPPALPAALTTGIIYAQRRLKKKGIFCISPQRINVCGQLNLVCFDKTGTLTRGGLDPWGVVPCDQNG
FQAVHSFASGKALPQGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATKWEMTASGDDFHIKEMLAHTIV
VKPTDMVAQVPAEGLAIVHQFPFSSALQRMTVIVQEMGGGRLAFMKGAPERVASFCQPDTVPTSFISELQ
IYTTQGFRVIALAYKKLEMDCPTTALMREKVESDLVFLGLLILENRLKEETKPVLEELISARIRTVMITG
DNLQTAITVARKSGMVSEGQKVILVEANEATGSSSASISWKLVEEKKPGPFGSQDTYINIREEVPENGRD
GSYHFALSGKSFHVISQYFSSLLPKILINGTIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKM
AHVGISLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMALYSMIQYVGVLLLYWKTNSL
SNYQFLFQDLAITTLIGVTMNLNGANPKLVPFRPAGRLISPPLLLSVVLNILLSLAMHIVGFILVQKQPW
YIMDYHSVCPVRNESASALAASPSVPEKTRSNSTFASFENTTIWFLGTINCIFVALVFSKGKPFRQPTYT
NYIFVLVLILQMGVCLFILFADIPEMHRRLDLLCTPVLWRVYILIMISSNFVVSLAVEKAIIENRALWIA
VKRCFGYQSKSQYRIWQRNLANDSSWPPLNQTSYSDMQGVSYSNPVFESNEEQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH