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Report for CCDS24950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24950.1 Public Mus musculus 11 Tm4sf5 23 108 98 CCDS HistoryNCBI Gene:75604Re-query CCDS DB by CCDS ID:24950.1Re-query CCDS DB by GeneID:75604See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019063.2 ENSMUSP00000019063.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019063.2Link to Ensembl Protein Viewer:ENSMUSP00000019063.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019063Re-query CCDS DB by Protein ID:ENSMUSP00000019063
Original member Current member NCBI NM_029360.3 NP_083636.2 Accepted alive Link to Nucleotide Sequence:NM_029360.3Link to Protein Sequence:NP_083636.2Re-query CCDS DB by Nucleotide ID:NM_029360Re-query CCDS DB by Protein ID:NP_083636Link to BLAST:NP_083636.2

Chromosomal Locations for CCDS 24950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70505331 70505504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70509794 70509874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70510215 70510351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70510569 70510752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70510842 70510856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGTGTACTGGAAAGTGTGCGCGCTGCCTGGGGCTCTCCCTCATCCCTCTCTCCCTGGTCTGCATCGTGG
CCAACGCCCTCCTGCTGGTACCTGATGGGAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTG
GCTCATGGGTGGCTTCATTGGAGGGGGCCTGATGGTGCTGTGTCCAGGAATTGCAGCGGTCCGGGCAGGG
GGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCTGCGCTCCGTCTTCTCCTCCG
CCTTTGGGGTGCTTGGCGCCATCTACTGCCTGTCAGTGGCGGGAGCTGGGCTCCGAATTGGACCCAAATG
CTTAATAGACAACAAGTGGGACTACCACTTCCAAGAAACAGAAGGCGCTTACTTGCGAAATGACACTCTT
TGGAATTTGTGTGAGGCGCCACCTCACGTGGTACCCTGGAATGTGACACTCTTCTCAATCCTGGTGGTCG
CATCAAGTCTGGAACTTGTGCTGTGTGGAATTCAGCTGGTGAATGCGACCTTTGGTGTGTTGTGTGGCGA
TTGCAGGAAAAAGGAGGGTGCAGCTCACTGA

Translation (196 aa):
MCTGKCARCLGLSLIPLSLVCIVANALLLVPDGKTTWTDGNLSLQVWLMGGFIGGGLMVLCPGIAAVRAG
GKGCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVAGAGLRIGPKCLIDNKWDYHFQETEGAYLRNDTL
WNLCEAPPHVVPWNVTLFSILVVASSLELVLCGIQLVNATFGVLCGDCRKKEGAAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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