NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30436.1 Public Mus musculus X Ripply1 23 108 98 CCDS HistoryNCBI Gene:622473Re-query CCDS DB by CCDS ID:30436.1Re-query CCDS DB by GeneID:622473See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101217.3 ENSMUSP00000098778.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101217.3Link to Ensembl Protein Viewer:ENSMUSP00000098778.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101217Re-query CCDS DB by Protein ID:ENSMUSP00000098778
Original member Current member NCBI NM_001037915.2 NP_001033004.1 Accepted alive Link to Nucleotide Sequence:NM_001037915.2Link to Protein Sequence:NP_001033004.1Re-query CCDS DB by Nucleotide ID:NM_001037915Re-query CCDS DB by Protein ID:NP_001033004Link to BLAST:NP_001033004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033004.1 201 Q2WG77 201 100% 0 0

Chromosomal Locations for CCDS 30436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139779712 139780012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139780491 139780555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139781113 139781188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139782148 139782311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGACCCCGCTGCCTCTCCTGCTGCTGCCCCTCCTGCTGCCCCTGCTGCTGCCCCAGCTGCTGACCCTG
CTGCTGACCCTGCTGCTGCCCTCCCTGGCCAGGCCTTGGCCCAAGCCCCTGCCCTAGCACAAATCAATGG
ACAAGAAGGTGCTAGGAATGAACGGGCAGCTTATCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAG
CCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGCGACAGCGGCTGAGGCTGCCAAGACTG
ACTCTGACTTCCATCACCCGGTCAGGCTCTACTGGCCCAAGTCCCACTCCTTTGACTACCTCTACAGTGC
TGGGGAGATATTACTAAACAACTTCCCTGTCCAGGCCACCATCAATTTATATGAGGATTCTGACAGTGCA
GACAATGAGGAAGACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGATGAAGAAGAAGAGGAAG
ATGAAGACAAAGATGTCAATGAGAATGAACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAA
GGCCACAGCTCATTCCCCTGACCCACACTCGGCCTGTCCAAATTGA

Translation (201 aa):
MDPAASPAAAPPAAPAAAPAADPAADPAAALPGQALAQAPALAQINGQEGARNERAAYLWRPWLSSINDQ
PRQARSLVDWADNRATAAEAAKTDSDFHHPVRLYWPKSHSFDYLYSAGEILLNNFPVQATINLYEDSDSA
DNEEDKEEEEEEEEEEDDEEEEEDEDKDVNENEPEVCMGVSEATTHKATAHSPDPHSACPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH