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Report for CCDS3973.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3973.2 Public Homo sapiens 5 MIER3 24 110 108 CCDS HistoryNCBI Gene:166968Re-query CCDS DB by CCDS ID:3973.2Re-query CCDS DB by GeneID:166968See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3973.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381213.7 ENSP00000370611.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381213.7Link to Ensembl Protein Viewer:ENSP00000370611.3Re-query CCDS DB by Nucleotide ID:ENST00000381213Re-query CCDS DB by Protein ID:ENSP00000370611
Original member Current member NCBI NM_152622.5 NP_689835.3 Accepted alive Link to Nucleotide Sequence:NM_152622.5Link to Protein Sequence:NP_689835.3Re-query CCDS DB by Nucleotide ID:NM_152622Re-query CCDS DB by Protein ID:NP_689835Link to BLAST:NP_689835.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689835.3 549 Q7Z3K6-3 549 100% 0 0

Chromosomal Locations for CCDS 3973.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 56923128 56923585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56923691 56923833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56923915 56924042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56928767 56928858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56930664 56930745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56933247 56933398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56935428 56935500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56935666 56935751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56937578 56937698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56938883 56939017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56946926 56947071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56950628 56950652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56952094 56952102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGCGGAGGCTTCTTTTGGAAGTTCGAGCCCAGTTGGGTCTTTGTCTTCTGAGGATCATGATTTTGACC
CCACTGCTGAGATGTTGGTCCATGACTATGATGATGAAAGAACTCTTGAAGAAGAGGAAATGATGGATGA
GGGTAAAAACTTCAGTTCAGAAATTGAAGACTTAGAAAAGGAAGGAACCATGCCTCTAGAAGATTTACTG
GCATTCTATGGCTATGAACCTACAATTCCAGCAGTTGCAAATTCCAGTGCAAATAGTTCCCCAAGTGAAC
TGGCAGATGAACTACCAGACATGACACTAGACAAAGAGGAAATAGCAAAAGACCTGTTGTCAGGTGATGA
CGAGGAAACTCAGTCTTCTGCGGATGATCTGACGCCATCTGTGACTTCCCATGAAACTTCTGATTTCTTC
CCTAGGCCTTTACGATCAAATACTGCATGTGATGGTGATAAGGAATCAGAGGTTGAAGATGTTGAAACAG
ACAGTGGTAATTCACCTGAAGATTTGAGGAAGGAAATAATGATTGGTTTACAATATCAGGCAGAGATTCC
CCCTTATCTTGGAGAGTACGATGGTAATGAGAAAGTATATGAAAACGAAGACCAGTTACTTTGGTGTCCT
GATGTGGTTTTGGAGAGCAAAGTTAAGGAATACCTTGTTGAGACTTCATTAAGGACTGGCAGTGAAAAAA
TAATGGATAGGATTTCTGCAGGAACACACACAAGGGACAATGAACAGGCATTATATGAACTTCTCAAGTG
TAACCACAATATAAAGGAAGCAATCGAAAGATACTGCTGCAATGGAAAGGCCTCTCAAGGAATGACTGCA
TGGACGGAAGAAGAATGCCGAAGCTTTGAACATGCACTCATGCTTTTTGGAAAAGATTTTCATCTTATAC
AGAAGAATAAGGTGAGAACTAGGACAGTTGCTGAGTGTGTAGCATTCTACTATATGTGGAAGAAATCTGA
ACGTTATGATTACTTTGCTCAACAGACAAGATTTGGGAAAAAAAGATATAACCATCACCCTGGAGTTACG
GACTATATGGATCGTTTAGTAGATGAAACAGAAGCTTTGGGTGGGACGGTAAATGCTTCAGCCTTAACTT
CTAACCGGCCTGAGCCTATTCCTGATCAACAGCTAAACATTCTCAACTCCTTCACTGCCAGTGACTTGAC
AGCTTTGACCAACAGTGTAGCAACCGTCTGCGACCCCACAGATGTGAATTGTTTGGATGATAGCTTTCCT
CCACTGGGCAACACACCCCGTGGACAAGTTAATCATGTGCCTGTTGTAACAGAAGAGTTACTCACCCTGC
CCAGCAATGGGGAAAGTGATTGTTTTAATTTATTTGAGACTGGATTTTATCACTCGGAGCTAAACCCTAT
GAACATGTGCAGTGAAGAGTCAGAGAGACCAGCAAAAAGATTGAAAATGGGCATTGCCGTCCCTGAATCC
TTTATGAATGAAGTTTCTGTAAATAACCTGGGTGTGGACTTTGAAAATCACACACATCACATCACCAGTG
CCAAAATGGCTGTTTCTGTGGCTGACTTTGGCAGTCTCTCTGCCAACGAGACCAATGGTTTCATCAGTGC
CCATGCTCTGCATCAGCACGCGGCCCTACACTCTGAGTGA

Translation (549 aa):
MAEASFGSSSPVGSLSSEDHDFDPTAEMLVHDYDDERTLEEEEMMDEGKNFSSEIEDLEKEGTMPLEDLL
AFYGYEPTIPAVANSSANSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHETSDFF
PRPLRSNTACDGDKESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEKVYENEDQLLWCP
DVVLESKVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKASQGMTA
WTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYFAQQTRFGKKRYNHHPGVT
DYMDRLVDETEALGGTVNASALTSNRPEPIPDQQLNILNSFTASDLTALTNSVATVCDPTDVNCLDDSFP
PLGNTPRGQVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMNMCSEESERPAKRLKMGIAVPES
FMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSANETNGFISAHALHQHAALHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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