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Report for CCDS89372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89372.1 Public Mus musculus 19 Cdc37l1 23 108 98 CCDS HistoryNCBI Gene:67072Re-query CCDS DB by CCDS ID:89372.1Re-query CCDS DB by GeneID:67072See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224511.1 ENSMUSP00000152985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224511.1Link to Ensembl Protein Viewer:ENSMUSP00000152985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224511Re-query CCDS DB by Protein ID:ENSMUSP00000152985
Original member NCBI NM_001302380.1 NP_001289309.1 Updated not alive Link to Nucleotide Sequence:NM_001302380.1Link to Protein Sequence:NP_001289309.1Re-query CCDS DB by Nucleotide ID:NM_001302380Re-query CCDS DB by Protein ID:NP_001289309
Current member NCBI NM_001302380.2 NP_001289309.1 Accepted alive Link to Nucleotide Sequence:NM_001302380.2Link to Protein Sequence:NP_001289309.1Re-query CCDS DB by Nucleotide ID:NM_001302380Re-query CCDS DB by Protein ID:NP_001289309Link to BLAST:NP_001289309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289309.1 312 Q9CZP7-4 312 100% 0 0

Chromosomal Locations for CCDS 89372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 28990538 28990669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28995041 28995322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28999261 28999351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29006972 29007087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29007573 29007695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29011889 29012053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29024804 29024833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGCAGCCGTGGCCGCCACCGGGCCCCTGGAGCTTCCCGAGGACTGGCGGGGAAACCGAGGAGGAGA
GTGACTTAGACGTGTCCCCCTCTTCGTCCCACTACTCTCCGGTACCGGACGGCGGCGCCCAGATGTATAG
CCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAAT
CTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACG
CCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCT
GGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAGAGTTTT
ATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAA
AAATCAGACATTTTGGTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCT
CGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAGAAAGGCGCT
CTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATG
TGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAAGCGGAGGAAGAAGGTTATTTTGAAGC
ATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCT
GTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGT
TCTCATTCTTGGAGGCTCATAGGAACTGA

Translation (312 aa):
MEQPWPPPGPWSFPRTGGETEEESDLDVSPSSSHYSPVPDGGAQMYSHGIELACQKQKEFVKSSVACKWN
LAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSF
INQDKRKTEEEDKSQSFMQKYEQKIRHFGMLSRWDDSQRFLSDHPHLVCEETAKYLILWCFHLEAEQKGA
LMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYAQSQSLQP
VTVQNHVPHSGVGCIGSLESLPQFSFLEAHRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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