NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47251.1 Public Homo sapiens 5 RGMB 24 110 108 CCDS HistoryNCBI Gene:285704Re-query CCDS DB by CCDS ID:47251.1Re-query CCDS DB by GeneID:285704See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308234.11 ENSP00000308219.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308234.11Link to Ensembl Protein Viewer:ENSP00000308219.7Re-query CCDS DB by Nucleotide ID:ENST00000308234Re-query CCDS DB by Protein ID:ENSP00000308219
Original member Current member NCBI NM_001012761.3 NP_001012779.2 Accepted alive Link to Nucleotide Sequence:NM_001012761.3Link to Protein Sequence:NP_001012779.2Re-query CCDS DB by Nucleotide ID:NM_001012761Re-query CCDS DB by Protein ID:NP_001012779Link to BLAST:NP_001012779.2
Original member Current member NCBI NM_001366509.1 NP_001353438.1 Accepted alive Link to Nucleotide Sequence:NM_001366509.1Link to Protein Sequence:NP_001353438.1Re-query CCDS DB by Nucleotide ID:NM_001366509Re-query CCDS DB by Protein ID:NP_001353438Link to BLAST:NP_001353438.1
Original member Current member NCBI NM_001366510.1 NP_001353439.1 Accepted alive Link to Nucleotide Sequence:NM_001366510.1Link to Protein Sequence:NP_001353439.1Re-query CCDS DB by Nucleotide ID:NM_001366510Re-query CCDS DB by Protein ID:NP_001353439Link to BLAST:NP_001353439.1

Chromosomal Locations for CCDS 47251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 98770669 98770673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98773953 98774206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98779580 98780088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98793085 98793753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGATAAGGAAGAAGAGGAAGCGAAGCGCGCCCCCCGGCCCATGCCGCAGCCACGGGCCCAGACCCGCCA
CGGCGCCCGCGCCGCCGCCCTCGCCGGAGCCCACGAGACCTGCATGGACGGGCATGGGCTTGAGAGCAGC
ACCTTCCAGCGCCGCCGCTGCCGCCGCCGAGGTTGAGCAGCGCCGCAGCCCCGGGCTCTGCCCCCCGCCG
CTGGAGCTGCTGCTGCTGCTGCTGTTCAGCCTCGGGCTGCTCCACGCAGGTGACTGCCAACAGCCAGCCC
AATGTCGAATCCAGAAATGCACCACGGACTTCGTGTCCCTGACTTCTCACCTGAACTCTGCCGTTGACGG
CTTTGACTCTGAGTTTTGCAAGGCCTTGCGTGCCTATGCTGGCTGCACCCAGCGAACTTCAAAAGCCTGC
CGTGGCAACCTGGTATACCATTCTGCCGTGTTGGGTATCAGTGACCTCATGAGCCAGAGGAATTGTTCCA
AGGATGGACCCACATCCTCTACCAACCCCGAAGTGACCCATGATCCTTGCAACTATCACAGCCACGCTGG
AGCCAGGGAACACAGGAGAGGGGACCAGAACCCTCCCAGTTACCTTTTTTGTGGCTTGTTTGGAGATCCT
CACCTCAGAACTTTCAAGGATAACTTCCAAACATGCAAAGTAGAAGGGGCCTGGCCACTCATAGATAATA
ATTATCTTTCAGTTCAAGTGACAAACGTACCTGTGGTCCCTGGATCCAGTGCTACTGCTACAAATAAGAT
CACTATTATCTTCAAAGCCCACCATGAGTGTACAGATCAGAAAGTCTACCAAGCTGTGACAGATGACCTG
CCGGCCGCCTTTGTGGATGGCACCACCAGTGGTGGGGACAGCGATGCCAAGAGCCTGCGTATCGTGGAAA
GGGAGAGTGGCCACTATGTGGAGATGCACGCCCGCTATATAGGGACCACAGTGTTTGTGCGGCAGGTGGG
TCGCTACCTGACCCTTGCCATCCGTATGCCTGAAGACCTGGCCATGTCCTACGAGGAGAGCCAGGACCTG
CAGCTGTGCGTGAACGGCTGCCCCCTGAGTGAACGCATCGATGACGGGCAGGGCCAGGTGTCTGCCATCC
TGGGACACAGCCTGCCTCGCACCTCCTTGGTGCAGGCCTGGCCTGGCTACACACTGGAGACTGCCAACAC
TCAATGCCATGAGAAGATGCCAGTGAAGGACATCTATTTCCAGTCCTGTGTCTTCGACCTGCTCACCACT
GGTGATGCCAACTTTACTGCCGCAGCCCACAGTGCCTTGGAGGATGTGGAGGCCCTGCACCCAAGGAAGG
AACGCTGGCACATTTTCCCCAGCAGTGGCAATGGGACTCCCCGTGGAGGCAGTGATTTGTCTGTCAGTCT
AGGACTCACCTGCTTGATCCTTATCGTGTTTTTGTAG

Translation (478 aa):
MIRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCPPP
LELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKAC
RGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPEVTHDPCNYHSHAGAREHRRGDQNPPSYLFCGLFGDP
HLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHHECTDQKVYQAVTDDL
PAAFVDGTTSGGDSDAKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDL
QLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT
GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVSLGLTCLILIVFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH