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Report for CCDS55904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55904.1 Public Homo sapiens 14 RNASE9 24 110 108 CCDS HistoryNCBI Gene:390443Re-query CCDS DB by CCDS ID:55904.1Re-query CCDS DB by GeneID:390443See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000553706.5 ENSP00000450570.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553706.5Link to Ensembl Protein Viewer:ENSP00000450570.1Re-query CCDS DB by Nucleotide ID:ENST00000553706Re-query CCDS DB by Protein ID:ENSP00000450570
Original member Current member EBI ENST00000557209.1 ENSP00000450987.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557209.1Link to Ensembl Protein Viewer:ENSP00000450987.1Re-query CCDS DB by Nucleotide ID:ENST00000557209Re-query CCDS DB by Protein ID:ENSP00000450987
Original member Current member NCBI NM_001110358.1 NP_001103828.1 Accepted alive Link to Nucleotide Sequence:NM_001110358.1Link to Protein Sequence:NP_001103828.1Re-query CCDS DB by Nucleotide ID:NM_001110358Re-query CCDS DB by Protein ID:NP_001103828Link to BLAST:NP_001103828.1
Original member Current member NCBI NM_001110361.1 NP_001103831.1 Accepted alive Link to Nucleotide Sequence:NM_001110361.1Link to Protein Sequence:NP_001103831.1Re-query CCDS DB by Nucleotide ID:NM_001110361Re-query CCDS DB by Protein ID:NP_001103831Link to BLAST:NP_001103831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103828.1 210 P60153-2 210 100% 0 0
NP_001103831.1 210 P60153-2 210 100% 0 0

Chromosomal Locations for CCDS 55904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20556452 20557083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20558615 20558615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGTCTGCAGGAAAAATGATGAGAACTCTCATCACCACACACCCACTGCCCCTGCTTCTATTGCCGCAGC
AGCTGCTGCAGCTGGTGCAGTTTCAAGAGGTGGATACAGATTTTGATTTCCCAGAAGAAGATAAAAAAGA
AGAATTTGAAGAGTGTTTGGAAAAATTTTTTAGTACAGGGCCCGCCAGACCACCTACCAAAGAAAAAGTC
AAAAGACGTGTCCTTATTGAACCTGGAATGCCACTAAATCATATAGAGTACTGTAACCATGAAATCATGG
GAAAAAATGTTTACTACAAACACCGTTGGGTGGCAGAACATTACTTCCTTCTTATGCAATATGACGAGCT
CCAAAAAATCTGTTACAACAGATTTGTGCCATGTAAGAATGGAATTAGGAAATGTAACAGGAGCAAAGGT
CTTGTAGAAGGAGTGTATTGTAATTTAACAGAAGCATTTGAAATACCAGCGTGTAAATACGAATCACTTT
ATAGGAAGGGCTACGTCCTTATCACTTGTTCATGGCAAAATGAAATGCAAAAACGTATTCCTCATACTAT
AAATGATCTCGTGGAGCCACCTGAACACAGAAGTTTCCTCAGTGAGGATGGTGTCTTTGTCATATCGCCC
TAG

Translation (210 aa):
MSAGKMMRTLITTHPLPLLLLPQQLLQLVQFQEVDTDFDFPEEDKKEEFEECLEKFFSTGPARPPTKEKV
KRRVLIEPGMPLNHIEYCNHEIMGKNVYYKHRWVAEHYFLLMQYDELQKICYNRFVPCKNGIRKCNRSKG
LVEGVYCNLTEAFEIPACKYESLYRKGYVLITCSWQNEMQKRIPHTINDLVEPPEHRSFLSEDGVFVISP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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